Factsheet for GSMUA_Achr4P20360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT4G32070.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT4G32070.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT4G32070.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05370_001	Banana	cytosol	73.28	75.31
GSMUA_Achr3P00890_001	Banana	cytosol	74.33	74.11
KRG84467	Soybean	cytosol	13.88	71.54
GSMUA_Achr4P04120_001	Banana	cytosol	48.36	63.28
Os09t0556200-00	Rice	cytosol, plasma membrane	64.63	63.12
Zm00001d021400_P001	Maize	cytosol	63.28	61.72
KRH05201	Soybean	cytosol	27.61	61.46
EER97166	Sorghum	cytosol	63.43	61.42
GSMUA_Achr9P22500_001	Banana	cytosol	62.69	60.96
TraesCS5A01G357000.1	Wheat	cytosol	62.54	60.29
TraesCS5D01G366100.1	Wheat	cytosol	62.39	60.14
HORVU5Hr1G088290.2	Barley	cytosol	62.39	59.97
TraesCS5B01G359500.1	Wheat	cytosol	62.39	59.97
VIT_11s0118g00490.t01	Wine grape	cytosol	60.0	59.29
Solyc08g029190.2.1	Tomato	nucleus	56.42	56.5
Solyc06g065910.2.1	Tomato	cytosol	57.61	56.35
PGSC0003DMT400038437	Potato	cytosol	55.82	55.99
PGSC0003DMT400049152	Potato	cytosol	55.82	55.99
PGSC0003DMT400067142	Potato	cytosol	57.01	55.77
VIT_04s0008g06310.t01	Wine grape	mitochondrion	61.34	54.73
CDX68815	Canola	cytosol, nucleus, plastid	51.94	50.95
KRH20222	Soybean	nucleus	54.78	50.69
CDY38510	Canola	nucleus	52.24	50.29
Solyc07g007390.2.1	Tomato	nucleus	58.36	50.26
KRH61724	Soybean	cytosol	54.33	50.14
KRH37816	Soybean	cytosol	54.63	50.14
CDY58928	Canola	cytosol	52.24	50.07
KRH03587	Soybean	nucleus	54.18	50.07
CDY11535	Canola	nucleus	52.54	49.86
KRH52396	Soybean	cytosol	7.46	48.54
CDX83226	Canola	cytosol	51.94	48.33
CDX75218	Canola	cytosol	51.94	48.0
PGSC0003DMT400078952	Potato	cytosol	57.91	47.84
Os08t0296900-01	Rice	cytosol	55.22	47.8
AT2G25290.4	Thale cress	cytosol	53.13	47.79
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	51.34	47.65
CDX72344	Canola	nucleus	49.85	47.58
Zm00001d024424_P001	Maize	cytosol	52.54	47.5
CDY13473	Canola	nucleus	51.04	47.3
Bra007805.1-P	Field mustard	nucleus	53.13	47.15
EES13437	Sorghum	cytosol	52.24	47.11
Zm00001d037923_P001	Maize	cytosol	11.34	46.91
Bra023964.1-P	Field mustard	nucleus	50.45	46.49
Bra000549.1-P	Field mustard	nucleus	52.69	46.14
AT4G32070.1	Thale cress	nucleus	52.84	45.27
CDX70924	Canola	cytosol	38.81	40.82
CDY51850	Canola	cytosol	38.36	40.41
Bra006557.1-P	Field mustard	cytosol	38.66	38.95
TraesCS5A01G163200.1	Wheat	cytosol	54.03	38.72
TraesCS5B01G160600.1	Wheat	cytosol	54.03	38.72
Zm00001d019666_P001	Maize	plastid	53.28	38.51
EER96429	Sorghum	plastid	53.28	38.43
TraesCS5D01G168200.1	Wheat	cytosol	53.58	38.4
KRH05202	Soybean	cytosol	19.7	37.93
HORVU5Hr1G050890.1	Barley	cytosol	52.99	37.85
GSMUA_Achr1P18260_001	Banana	nucleus	38.36	36.4
AT5G20360.1	Thale cress	cytosol	40.15	33.25
TraesCS5D01G165100.1	Wheat	cytosol	14.93	25.97
HORVU5Hr1G050130.1	Barley	cytosol	15.37	25.94
TraesCS5B01G157700.1	Wheat	cytosol	15.82	25.0
TraesCS5A01G160000.1	Wheat	cytosol	14.48	24.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G20360_001	EnsemblPlants:GSMUA_Achr4P20360_001	EnsemblPlants:GSMUA_Achr4T20360_001	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:M0SQJ9	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000296DA4D
SEG:seg	:	:	:	:	:

Description

octicosapeptide/Phox/Bem1p, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G20360_001]

Coordinates

chr4:+:21004003..21006640

Molecular Weight (calculated)

77175.4 Da

IEP (calculated)

5.312

GRAVY (calculated)

-0.506

Length

670 amino acids

Sequence
(BLAST)

001: MGKPTAKKKS SGGKHTDANS RNSRSIEHSP KVFDEDTTIF MDMARDLKEE GNMLFQKREY ERAVLKYEKA IKLLPKNHID VAYLHSNTAA CYMQMIPEEY
101: HLAINQCNLS LKVSPKYSKA LLKRAKCFEA LNRLDLACKD VDLVLSLEPN NLTALEISER VKKTMEKKGT VLDDKSLYPL PEPPTVKEKL KKKKRSHKPM
201: EKQVEVKEEP MKSVKLVFGE DIRWAQVPAN CTMLQLREIV GNKFPNLKAV LIKYKDKEGD LVTITTSEEL RWAEESADPL GSVRLYIVEV NPDFEPLLEE
301: AKNSSLGRKL DRETNSISEN GSIRHDNDKV SSVYIDDWIV QFARLFKSHV GFNSDEYLNL HELGMKLFSE AMEETVTTEQ AQEIFEITED KFQEMAALAF
401: FNWGNVHMSR ARKRLFLSEN PTKESMLAEV KAAYEWAQTE YVKAGKSYEE ALKFKANFYE GLLALALQQF EQAKLSWYYA IGSEADLETW PSSEVLELFN
501: QAEDNIERGT EMWEEIEEQR LKELSKPNEE KTLLQKLGLE DYFIELSTDE AAELASNMRS QINILWGTML YERSVVEFRL GIPLWEECLM AAVDKFKLAG
601: ASPTDLAVMI KNHCANETAQ EGLGFKIDEI VQAWNEMYDA KKWISGVPSF RLEPLFRRRV PKLHYILEHI

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.