Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G32070.1 TraesCS4A01G206200.2 AT4G09570.1 19130088
AT4G32070.1 TraesCS4B01G109800.2 AT4G09570.1 19130088
AT4G32070.1 TraesCS4D01G107200.1 AT4G09570.1 19130088
AT4G32070.1 TraesCS5A01G107900.1 AT4G09570.1 19130088
AT4G32070.1 TraesCS5B01G115400.1 AT4G09570.1 19130088
AT4G32070.1 TraesCS5D01G122800.1 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G157700.1 Wheat cytosol 72.98 68.16
TraesCS5D01G165100.1 Wheat cytosol 44.95 46.23
HORVU5Hr1G050130.1 Barley cytosol 39.65 39.55
KRH05202 Soybean cytosol 18.94 21.55
KRH52396 Soybean cytosol 5.3 20.39
GSMUA_Achr3P00890_001 Banana cytosol 24.75 14.58
GSMUA_Achr4P20360_001 Banana cytosol 24.49 14.48
CDX70924 Canola cytosol 22.98 14.29
GSMUA_Achr9P22500_001 Banana cytosol 24.75 14.22
PGSC0003DMT400038437 Potato cytosol 23.99 14.22
PGSC0003DMT400049152 Potato cytosol 23.99 14.22
Solyc08g029190.2.1 Tomato nucleus 23.99 14.2
Solyc06g065910.2.1 Tomato cytosol 24.49 14.16
CDY51850 Canola cytosol 22.73 14.15
GSMUA_Achr7P05370_001 Banana cytosol 23.23 14.11
PGSC0003DMT400067142 Potato cytosol 24.24 14.01
VIT_11s0118g00490.t01 Wine grape cytosol 23.74 13.86
TraesCS5A01G357000.1 Wheat cytosol 24.24 13.81
Bra006557.1-P Field mustard cytosol 22.98 13.68
KRH61724 Soybean cytosol 24.49 13.36
KRH37816 Soybean cytosol 23.74 12.88
VIT_04s0008g06310.t01 Wine grape mitochondrion 24.24 12.78
KRH20222 Soybean nucleus 23.23 12.71
KRH03587 Soybean nucleus 23.23 12.69
CDX72344 Canola nucleus 22.47 12.68
TraesCS5A01G163200.1 Wheat cytosol 29.8 12.62
CDX68815 Canola cytosol, nucleus, plastid 21.72 12.59
CDY13473 Canola nucleus 22.98 12.59
Bra023964.1-P Field mustard nucleus 22.98 12.52
AT2G25290.4 Thale cress cytosol 23.48 12.48
CDY11535 Canola nucleus 22.22 12.46
CDY58928 Canola cytosol 21.72 12.3
Zm00001d024424_P001 Maize cytosol 22.98 12.28
Os08t0296900-01 Rice cytosol 23.99 12.27
Solyc07g007390.2.1 Tomato nucleus 23.99 12.21
Bra011320.1-P Field mustard cytosol, nucleus, plastid 21.97 12.05
PGSC0003DMT400078952 Potato cytosol 24.49 11.96
CDY38510 Canola nucleus 20.96 11.93
CDX75218 Canola cytosol 21.46 11.72
Bra000549.1-P Field mustard nucleus 22.47 11.63
EES13437 Sorghum cytosol 21.72 11.57
AT4G32070.1 Thale cress nucleus 22.47 11.38
Bra007805.1-P Field mustard nucleus 21.46 11.26
CDX83226 Canola cytosol 20.2 11.11
AT5G20360.1 Thale cress cytosol 22.22 10.88
TraesCS5A01G164700.1 Wheat nucleus, plastid 20.96 10.6
KRH05201 Soybean cytosol 6.06 7.97
GSMUA_Achr4P04120_001 Banana cytosol 8.59 6.64
KRG84467 Soybean cytosol 1.01 3.08
Protein Annotations
Gene3D:1.25.40.10MapMan:20.2.4.5ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR000270InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:PB1_domPFAM:PF00564
PFscan:PS50005PFscan:PS50293PANTHER:PTHR22904PANTHER:PTHR22904:SF419SMART:SM00028SUPFAM:SSF48452
SUPFAM:SSF54277InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatEnsemblPlantsGene:TraesCS5A01G160000EnsemblPlants:TraesCS5A01G160000.1
TIGR:cd05992SEG:seg::::
Description
No Description!
Coordinates
chr5A:+:341504183..341505553
Molecular Weight (calculated)
44175.5 Da
IEP (calculated)
4.253
GRAVY (calculated)
-0.756
Length
396 amino acids
Sequence
(BLAST)
001: MSSEQEHPET SELEEEVEKD EDAAIVELVT ELKQEGTTLF RLRDYDGAAF KFDEAIRLSP RAPRAYNEND IASLHSNVAA CYMHMNAHRP EDDYHYHQAI
101: DRCNMALDAS PRYTKALLKR ARCFEALDRL DLACVDVQEV LTLEPNNAVA LELLESLREE MEEKKFLLEQ EARSLDDLIK VISASEKVAK QFSSTIATAA
201: DPANKAVSTE TDDDHDMEGI LLLGEQDDEH ASYDDNNDGE EAPHAHGQSE EEAHVGDQSG QHKQEDGDSA EHHAGAENSA GSAGATRCVE FVLREEGDVR
301: RIALLPQDGG LAQLMDIARS KFPDLKELSV NFKDDRGDLV TVDSTTDQST WFDEANSRSQ GPLRLYVTEG NHKRVSCPDQ PIREHDSVDP CLSHDQ
Best Arabidopsis Sequence Match ( AT2G25290.1 )
(BLAST)
001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ
Arabidopsis Description
Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.