Factsheet for VIT_11s0118g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1384g00010.t01	Wine grape	cytosol	5.46	61.67
KRH20222	Soybean	nucleus	65.04	60.91
VIT_00s0787g00010.t01	Wine grape	cytosol	12.68	60.56
VIT_04s0008g06310.t01	Wine grape	mitochondrion	66.52	60.05
KRH03587	Soybean	nucleus	64.16	60.0
GSMUA_Achr4P20360_001	Banana	cytosol	59.29	60.0
KRH37816	Soybean	cytosol	64.45	59.86
GSMUA_Achr3P00890_001	Banana	cytosol	59.14	59.67
Solyc07g007390.2.1	Tomato	nucleus	68.29	59.51
GSMUA_Achr7P05370_001	Banana	cytosol	56.78	59.05
PGSC0003DMT400078952	Potato	cytosol	67.7	56.6
Os09t0556200-00	Rice	cytosol, plasma membrane	56.78	56.12
EER97166	Sorghum	cytosol	56.49	55.35
Zm00001d021400_P001	Maize	cytosol	56.05	55.31
GSMUA_Achr4P04120_001	Banana	cytosol	40.41	53.52
GSMUA_Achr9P22500_001	Banana	cytosol	54.28	53.41
TraesCS5A01G357000.1	Wheat	cytosol	54.57	53.24
TraesCS5D01G366100.1	Wheat	cytosol	54.57	53.24
HORVU5Hr1G088290.2	Barley	cytosol	54.42	52.94
TraesCS5B01G359500.1	Wheat	cytosol	54.13	52.65
VIT_02s0012g02600.t01	Wine grape	cytosol	10.62	46.15
EES13437	Sorghum	cytosol	50.0	45.63
CDY51850	Canola	cytosol	42.77	45.6
Zm00001d024424_P001	Maize	cytosol	49.56	45.34
CDX70924	Canola	cytosol	42.18	44.9
Os08t0296900-01	Rice	cytosol	51.03	44.7
Bra006557.1-P	Field mustard	cytosol	43.22	44.06
VIT_00s1008g00010.t01	Wine grape	cytosol	14.9	43.16
VIT_17s0000g03920.t01	Wine grape	cytosol	12.24	41.5
AT5G20360.1	Thale cress	cytosol	45.13	37.82
Zm00001d037923_P001	Maize	cytosol	9.0	37.65
EER96429	Sorghum	plastid	49.41	36.06
TraesCS5D01G168200.1	Wheat	cytosol	49.26	35.72
TraesCS5B01G160600.1	Wheat	cytosol	48.82	35.4
TraesCS5A01G163200.1	Wheat	cytosol	48.67	35.29
Zm00001d019666_P001	Maize	plastid	48.23	35.28
HORVU5Hr1G050890.1	Barley	cytosol	48.08	34.75
TraesCS5D01G165100.1	Wheat	cytosol	14.75	25.97
HORVU5Hr1G050130.1	Barley	cytosol	14.6	24.94
TraesCS5B01G157700.1	Wheat	cytosol	14.9	23.82
TraesCS5A01G160000.1	Wheat	cytosol	13.86	23.74

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100248831	wikigene:100248831	MapMan:20.2.4.5	Gene3D:3.10.20.90	ProteinID:CCB49922
ProteinID:CCB49922.1	ncoils:Coil	UniProt:F6HCH6	EMBL:FN595515	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100248831
wikigene:LOC100248831	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745
PANTHER:PTHR22904	PANTHER:PTHR22904:SF392	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002108D64	ArrayExpress:VIT_11s0118g00490	EnsemblPlantsGene:VIT_11s0118g00490
EnsemblPlants:VIT_11s0118g00490.t01	unigene:Vvi.10921	RefSeq:XP_002262977	RefSeq:XP_002262977.2	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:6266763..6276896

Molecular Weight (calculated)

77470.6 Da

IEP (calculated)

5.383

GRAVY (calculated)

-0.528

Length

678 amino acids

Sequence
(BLAST)

001: MGKQSLKKKN QGGGKPGDGK VKQSKVGDNG ARPYDKDTAV FIEMSQELKE EGNKLFQKRD HEGAMLKYEK ALKLLPRNHV DVAYLRSNMA ACYMQMGLSD
101: YPRAIHECNL ALEVAPKYSK ALLKRARCYE ALNRLDLALR DVTTILNMEP NNLMALEIGE SVKKAIEKKG IKVNDRATNL APEYFVPSAS TSPKVEKKAE
201: DKVVVEEKIN RVEEEEPKKT VKLVFGEDIR RAQLPVNCSL SELREVIRDR FPSSRAVLIK YRDQEGDLVT ITTNEELKLA EASVGTQGSI RLYVVEVNPE
301: QDPFFERVMN EVDANKIDMK QNNGTLNGTV GKCKETGIGS SYIDDWIIQF AQLFKNHVGF DSDEYLDLHE HGIKFYSEAM EETVTSEEAQ GLFEIAAEKF
401: QEMAALALFN WGNVHMSRAR KRVYFTEDAS RESVLVQIKT AHDWAQKEYL KAKQRYEEAL KIKPDFYEGL LALGQQQFEQ AKLSWYYAIG SNVDLEMWPC
501: EEVLQLYNKA EDNMEKGMQM WEELEEQRLS ELSKPNEVKI QLQNMGLDGL FKDISVSKAA EQAANMKSQI NLIWGTMLYE RSIVEFKLGL PVWQESLEVS
601: VEKFELAGAS PTDIAIMIKN HCSSNNALED LGFKIDEIVQ AWNEMYEAKR WQSGVPSFRL EPLFRRRVPK LYHALEHV

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.