Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G359500.1 | Wheat | cytosol | 98.13 | 97.85 |
| TraesCS5A01G357000.1 | Wheat | cytosol | 95.68 | 95.68 |
| HORVU5Hr1G088290.2 | Barley | cytosol | 95.54 | 95.27 |
| Os09t0556200-00 | Rice | cytosol, plasma membrane | 83.31 | 84.4 |
| Zm00001d021400_P001 | Maize | cytosol | 79.86 | 80.79 |
| EER97166 | Sorghum | cytosol | 80.43 | 80.78 |
| KRG84467 | Soybean | cytosol | 12.09 | 64.62 |
| GSMUA_Achr4P20360_001 | Banana | cytosol | 60.14 | 62.39 |
| GSMUA_Achr7P05370_001 | Banana | cytosol | 56.4 | 60.12 |
| GSMUA_Achr4P04120_001 | Banana | cytosol | 43.88 | 59.57 |
| GSMUA_Achr3P00890_001 | Banana | cytosol | 57.27 | 59.23 |
| Zm00001d037923_P001 | Maize | cytosol | 13.53 | 58.02 |
| KRH05201 | Soybean | cytosol | 24.75 | 57.14 |
| VIT_11s0118g00490.t01 | Wine grape | cytosol | 53.24 | 54.57 |
| GSMUA_Achr9P22500_001 | Banana | cytosol | 53.96 | 54.43 |
| Solyc08g029190.2.1 | Tomato | nucleus | 50.94 | 52.91 |
| PGSC0003DMT400038437 | Potato | cytosol | 50.65 | 52.69 |
| PGSC0003DMT400049152 | Potato | cytosol | 50.65 | 52.69 |
| Solyc06g065910.2.1 | Tomato | cytosol | 50.07 | 50.8 |
| PGSC0003DMT400067142 | Potato | cytosol | 49.5 | 50.22 |
| CDX68815 | Canola | cytosol, nucleus, plastid | 48.35 | 49.19 |
| VIT_04s0008g06310.t01 | Wine grape | mitochondrion | 52.37 | 48.47 |
| CDY38510 | Canola | nucleus | 48.2 | 48.13 |
| KRH61724 | Soybean | cytosol | 50.22 | 48.07 |
| CDY58928 | Canola | cytosol | 48.2 | 47.93 |
| CDY11535 | Canola | nucleus | 48.63 | 47.88 |
| CDX75218 | Canola | cytosol | 49.64 | 47.59 |
| KRH37816 | Soybean | cytosol | 49.93 | 47.53 |
| KRH20222 | Soybean | nucleus | 49.5 | 47.51 |
| Solyc07g007390.2.1 | Tomato | nucleus | 53.09 | 47.43 |
| Bra011320.1-P | Field mustard | cytosol, nucleus, plastid | 48.92 | 47.09 |
| CDX83226 | Canola | cytosol | 48.63 | 46.94 |
| AT2G25290.4 | Thale cress | cytosol | 49.93 | 46.58 |
| KRH03587 | Soybean | nucleus | 48.49 | 46.48 |
| CDY13473 | Canola | nucleus | 47.91 | 46.06 |
| Bra023964.1-P | Field mustard | nucleus | 47.77 | 45.67 |
| CDX72344 | Canola | nucleus | 46.04 | 45.58 |
| Bra007805.1-P | Field mustard | nucleus | 49.35 | 45.43 |
| PGSC0003DMT400078952 | Potato | cytosol | 52.52 | 45.01 |
| Bra000549.1-P | Field mustard | nucleus | 49.35 | 44.84 |
| KRH52396 | Soybean | cytosol | 6.33 | 42.72 |
| AT4G32070.1 | Thale cress | nucleus | 48.06 | 42.71 |
| KRH05202 | Soybean | cytosol | 19.71 | 39.37 |
| CDY51850 | Canola | cytosol | 35.11 | 38.36 |
| Bra006557.1-P | Field mustard | cytosol | 35.25 | 36.84 |
| TraesCS5D01G168200.1 | Wheat | cytosol | 49.5 | 36.79 |
| CDX70924 | Canola | cytosol | 33.67 | 36.73 |
| TraesCS5D01G170500.1 | Wheat | nucleus | 36.55 | 32.56 |
| AT5G20360.1 | Thale cress | cytosol | 35.54 | 30.53 |
| TraesCS5D01G165100.1 | Wheat | cytosol | 14.96 | 27.01 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:20.2.4.5 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:PB1_dom | PFAM:PF00564 |
| PFscan:PS50005 | PFscan:PS50293 | PFscan:PS51745 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF429 | SMART:SM00028 |
| SMART:SM00666 | SUPFAM:SSF48452 | SUPFAM:SSF54277 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| EnsemblPlantsGene:TraesCS5D01G366100 | EnsemblPlants:TraesCS5D01G366100.1 | TIGR:cd05992 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:+:443011661..443014298
Molecular Weight (calculated)
78458.6 Da
IEP (calculated)
5.053
GRAVY (calculated)
-0.608
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKPSQKKNK RASSGAKSGD HHGGAKPGAL ERSGSKVLDG DETIFAEMAQ ELREEGNKLF QRRDYERALL NYEKAVKLLP ASAALDAAYL HSNLAACYMQ
101: MSPPDHYRAI NECNLALDAS PKYSKALLKR ARCFEALGRL DLAARDVDRV LAAEPGNLTA LDVADRVRRT MEEKGFVVDG EAVMPTPEEV VAAAPKQQQK
201: PRKKKGRKAA AKAAAAAVEE QGEEKAAEPV KEAEEPPRQV KLVFGEDIRW AQVPATCSMA QLREAVRGKF PGLKAVLVKY KDREGDLVTI TNQDELKWAE
301: DLTEPGSSLR LYVTEADPEH EPYVEDASSN PLDRNTHNAS DNGSIRSNRQ DEDRSTVTYI DDWIVQFARL FKNHVGVSSD EYLDLHEVSM KLYTDAIEDT
401: ITTDEAQEVF QLAEGNFQEM AALAFFHWGN VHMSRARKRL LLPEDSPKEL VLEKVREAYE WAKEEYKKAG KTYEEAVRAK PDFFEGFLAL AHQQFEQAKL
501: SWYYAIGTNA DLDTWPSSEV LELFNRAEDN MEKGTEMWEE VEEQRLKNRS KPSQENAVLE KMGMEEYIKD VSTDDAAERA SNMRSQINIL WGMLLYERSV
601: VEFKLGLPAW EDCLMAAIEK FKLGGASATN IAVLVKNHCA NETAQDGLGF NVDEIVQAWN EMYDIKRWLR GVPSFRLEPL FRRRTPQLHM ALEHI
101: MSPPDHYRAI NECNLALDAS PKYSKALLKR ARCFEALGRL DLAARDVDRV LAAEPGNLTA LDVADRVRRT MEEKGFVVDG EAVMPTPEEV VAAAPKQQQK
201: PRKKKGRKAA AKAAAAAVEE QGEEKAAEPV KEAEEPPRQV KLVFGEDIRW AQVPATCSMA QLREAVRGKF PGLKAVLVKY KDREGDLVTI TNQDELKWAE
301: DLTEPGSSLR LYVTEADPEH EPYVEDASSN PLDRNTHNAS DNGSIRSNRQ DEDRSTVTYI DDWIVQFARL FKNHVGVSSD EYLDLHEVSM KLYTDAIEDT
401: ITTDEAQEVF QLAEGNFQEM AALAFFHWGN VHMSRARKRL LLPEDSPKEL VLEKVREAYE WAKEEYKKAG KTYEEAVRAK PDFFEGFLAL AHQQFEQAKL
501: SWYYAIGTNA DLDTWPSSEV LELFNRAEDN MEKGTEMWEE VEEQRLKNRS KPSQENAVLE KMGMEEYIKD VSTDDAAERA SNMRSQINIL WGMLLYERSV
601: VEFKLGLPAW EDCLMAAIEK FKLGGASATN IAVLVKNHCA NETAQDGLGF NVDEIVQAWN EMYDIKRWLR GVPSFRLEPL FRRRTPQLHM ALEHI
001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV
Arabidopsis Description
Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.