CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51850	Canola	cytosol	87.76	87.89
AT5G20360.1	Thale cress	cytosol	65.46	51.55
VIT_11s0118g00490.t01	Wine grape	cytosol	44.9	42.18
GSMUA_Achr4P20360_001	Banana	cytosol	40.82	38.81
GSMUA_Achr3P00890_001	Banana	cytosol	40.82	38.69
KRH03587	Soybean	nucleus	43.64	38.34
GSMUA_Achr7P05370_001	Banana	cytosol	39.25	38.34
KRH20222	Soybean	nucleus	42.86	37.71
KRH37816	Soybean	cytosol	42.7	37.26
Solyc07g007390.2.1	Tomato	nucleus	43.8	35.86
GSMUA_Achr4P04120_001	Banana	cytosol	28.73	35.74
CDY38510	Canola	nucleus	38.78	35.49
CDY58928	Canola	cytosol	38.93	35.48
Zm00001d021400_P001	Maize	cytosol	37.68	34.93
CDX72344	Canola	nucleus	38.46	34.9
CDY11535	Canola	nucleus	38.46	34.7
Os09t0556200-00	Rice	cytosol, plasma membrane	37.36	34.69
CDX83226	Canola	cytosol	39.09	34.58
CDX68815	Canola	cytosol, nucleus, plastid	37.05	34.55
EER97166	Sorghum	cytosol	37.52	34.54
PGSC0003DMT400078952	Potato	cytosol	43.8	34.4
GSMUA_Achr9P22500_001	Banana	cytosol	37.21	34.4
CDY13473	Canola	nucleus	38.78	34.16
TraesCS5D01G366100.1	Wheat	cytosol	36.73	33.67
TraesCS5B01G359500.1	Wheat	cytosol	36.73	33.57
HORVU5Hr1G088290.2	Barley	cytosol	36.73	33.57
TraesCS5A01G357000.1	Wheat	cytosol	36.58	33.53
CDX75218	Canola	cytosol	37.36	32.83
Os08t0296900-01	Rice	cytosol	37.05	30.49
Zm00001d024424_P001	Maize	cytosol	34.38	29.55
EES13437	Sorghum	cytosol	34.07	29.21
CDY69227	Canola	cytosol	21.98	29.11
EER96429	Sorghum	plastid	37.52	25.73
Zm00001d019666_P001	Maize	plastid	37.05	25.46
HORVU5Hr1G050890.1	Barley	cytosol	36.42	24.73
TraesCS5D01G168200.1	Wheat	cytosol	35.95	24.49
TraesCS5B01G160600.1	Wheat	cytosol	35.79	24.39
TraesCS5A01G163200.1	Wheat	cytosol	35.79	24.39
CDY30038	Canola	cytosol, plastid	31.55	24.33
HORVU5Hr1G050130.1	Barley	cytosol	15.07	24.18
TraesCS5D01G165100.1	Wheat	cytosol	14.6	24.16
TraesCS5A01G160000.1	Wheat	cytosol	14.29	22.98
TraesCS5B01G157700.1	Wheat	cytosol	14.91	22.41
Zm00001d037923_P001	Maize	cytosol	5.18	20.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EnsemblPlants:CDX70924	ProteinID:CDX70924	ProteinID:CDX70924.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00140834001	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF392	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE938D
SEG:seg	:	:	:	:	:

Description

BnaC03g10080D

Coordinates

chrLK031791:-:2762927..2765824

Molecular Weight (calculated)

72849.2 Da

IEP (calculated)

5.608

GRAVY (calculated)

-0.470

Length

637 amino acids

Sequence
(BLAST)

001: MEKLKGKLEE PETSHQTQSD DPKVEPLDYI SKAQSLKEAG NKLFQRRDYD NAMLKYKEAI DVLPQDHVEV SHIRSNMASC YMHSDPGEYA KAIHECDLAL
101: TITPDYTKAL LKRARCYEAL NKLDLALRDV CLVSELDPNN PMASEIAVKL KRTLEGKGLM VKDSNRSSSS SQVVQEKSNV VDNAEKKKNN NLADVKGKEK
201: IIEDKHEEVI VEDNSVLKKT VKFVYSEDVR LAELPLNCTL FHLREVVHER FPSLRAVHIK YKDQEGDLVT ITTDEELRMS EEVSGLDTTM RMRFYIVEVS
301: PEQDPFFGRL VEMKKLKITA DSFKAKANGK GTCKIEDWMV EFARLFKIQA NVDSDDTSLN LQELGMKLNS EAMEEVVTSE EAQAPFEKAA QQFQELVARS
401: LLKLGHVHMS GARKRLSLLR ESSSQVVETA CEFALKEHAK AKEKYEEAMR VKPDLLEVFL ALALQQFEEA RLSWYYVLLS RVDLKTWPYG DVVQLYRSAK
501: SNIKKSMEGL KRLGSSKAAD KAAKLKSWLD VLSCAVLYER SMMEYKLDLP TWQENLEGAV VILELAGTCE EDVAALIRDD YVTDNTLRDL RFHVDEVLQI
601: FHEIYEAKEW RNGIPSDQFE EILKRRIGNI FHVSHTT

Best Arabidopsis Sequence Match ( AT5G20360.6 )
(BLAST)

001: MEKQNEEIST DDAETSQSQL VDDSKVETLD DCVSKAQGLK EEGNKLFQKR DYDGAMFKYG EAIKILPKDH VEVSHVRANV ASCYMQLEPG EFAKAIHECD
101: LALSVTPDHN KALLKRARCY EALNKLDLAL RDVCMVSKLD PKNPMASEIV EKLKRTLESK GLRINNSVIE LPPDYVEPVG ASPAALWAKL GKVRVKKTKK
201: SNQVEEKSEG EGEDVEPEKK NNVLAEKGKE KIKMKVKGKQ SDKRSDTSKE QEKVIIEEEL LVIGVEDVNK DVKFVYSDDI RLAELPINCT LFKLREVVHE
301: RFPSLRAVHI KYRDQEGDLV TITTDEELRM SEVSSRSQGT MRFYVVEVSP EQDPFFGRLV EMKKLKITAD SFKAKVNGRG GCKVEDWMIE FAHLFKIQAR
401: IDSDRCLNLQ ELGMKLNSEA MEEVVTSDAA QGPFDRAAQQ FQEVAARSLL NLGYVHMSGA RKRLSLLQGV SGESVSEQVK TAYECAKKEH ANAKEKYEEA
501: MKIKPECFEV FLALGLQQFE EARLSWYYVL VSHLDLKTWP YADVVQFYQS AESNIKKSME VLENLETGKE SEPSQAGKTD CLTHEKDLGS STQNNPAKEA
601: GRLKSWIDIL LCAVLYERSI MEYKLDQPFW RESLEAAMEK FELAGTCKDD VVEIISEDYV AGNTLRDIRF HMEEIIQIFD EIYEAKHWTN GIPSDQLEEI
701: LKRRAENIFH VPNIAIQRG

Arabidopsis Description

Phox3Protein PHOX3 [Source:UniProtKB/Swiss-Prot;Acc:F4K487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.