CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	CDX90725	AT4G09570.1	19130088
AT4G32070.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13473	Canola	nucleus	86.32	83.82
CDX68815	Canola	cytosol, nucleus, plastid	73.22	75.26
CDX75218	Canola	cytosol	74.79	72.41
KRG84467	Soybean	cytosol	13.11	70.77
CDY11535	Canola	nucleus	67.66	67.28
CDY58928	Canola	cytosol	66.95	67.24
AT4G32070.1	Thale cress	nucleus	74.64	67.01
CDY38510	Canola	nucleus	66.1	66.67
CDX83226	Canola	cytosol	65.53	63.89
KRH05201	Soybean	cytosol	25.64	59.8
PGSC0003DMT400038437	Potato	cytosol	52.85	55.54
PGSC0003DMT400049152	Potato	cytosol	52.85	55.54
Solyc08g029190.2.1	Tomato	nucleus	52.56	55.16
Solyc06g065910.2.1	Tomato	cytosol	52.42	53.72
PGSC0003DMT400067142	Potato	cytosol	52.14	53.43
VIT_04s0008g06310.t01	Wine grape	mitochondrion	56.84	53.13
KRH61724	Soybean	cytosol	53.7	51.93
GSMUA_Achr4P20360_001	Banana	cytosol	47.58	49.85
GSMUA_Achr7P05370_001	Banana	cytosol	46.01	49.54
GSMUA_Achr3P00890_001	Banana	cytosol	47.15	49.26
KRH52396	Soybean	cytosol	7.12	48.54
Os09t0556200-00	Rice	cytosol, plasma membrane	47.29	48.4
GSMUA_Achr4P04120_001	Banana	cytosol	34.76	47.66
Zm00001d021400_P001	Maize	cytosol	46.44	47.45
EER97166	Sorghum	cytosol	46.3	46.97
TraesCS5D01G366100.1	Wheat	cytosol	45.58	46.04
TraesCS5A01G357000.1	Wheat	cytosol	45.44	45.9
TraesCS5B01G359500.1	Wheat	cytosol	45.16	45.48
HORVU5Hr1G088290.2	Barley	cytosol	45.01	45.34
GSMUA_Achr9P22500_001	Banana	cytosol	42.88	43.69
KRH05202	Soybean	cytosol	21.23	42.82
Os08t0296900-01	Rice	cytosol	46.72	42.38
EES13437	Sorghum	cytosol	44.44	41.99
Zm00001d024424_P001	Maize	cytosol	43.45	41.16
CDX70924	Canola	cytosol	34.9	38.46
Zm00001d037923_P001	Maize	cytosol	8.69	37.65
CDY51850	Canola	cytosol	33.48	36.95
EER96429	Sorghum	plastid	44.59	33.69
Zm00001d019666_P001	Maize	plastid	43.59	33.01
HORVU5Hr1G050890.1	Barley	cytosol	42.45	31.77
TraesCS5D01G168200.1	Wheat	cytosol	42.17	31.66
TraesCS5B01G160600.1	Wheat	cytosol	41.88	31.44
TraesCS5A01G163200.1	Wheat	cytosol	41.74	31.34
CDY69227	Canola	cytosol	20.94	30.56
CDY30038	Canola	cytosol, plastid	34.33	29.18
TraesCS5D01G165100.1	Wheat	cytosol	14.67	26.75
HORVU5Hr1G050130.1	Barley	cytosol	14.1	24.94
TraesCS5A01G160000.1	Wheat	cytosol	12.68	22.47
TraesCS5B01G157700.1	Wheat	cytosol	13.11	21.7

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EnsemblPlants:CDX72344	ProteinID:CDX72344	ProteinID:CDX72344.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099836001	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50293	PFscan:PS51745
PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EDD4A5	SEG:seg	:

Description

BnaC07g43660D

Coordinates

chrLK031796:-:782269..784581

Molecular Weight (calculated)

80051.5 Da

IEP (calculated)

5.810

GRAVY (calculated)

-0.597

Length

702 amino acids

Sequence
(BLAST)

001: MGKPATKKKT PVTAKDASGG GKTNHRSTSR AFDEDMEIFI SRALELKEEG NKLFQKRDNE GAMLSFDKAV KLLPKEHIDV AYLRTSMASC YMRMGLGEYP
101: NAINECNLAL EASPRYSKAL VRRSRCYEAL NKLDYAFRDA RIVLNMEPEN ASANEVFERV KKALVEKGVD VDEMEKSFVN KVVKESKKKK KSGVESPKIV
201: KRDEGESKEK SDKKSEIDAK IGGNKEEKKP KLKKQKKRNG NKAGGEERKM EDDKVVVMDK EVIASEFFEQ STVTRTVKLV HGDDIRWAQL PLDSSVRLVR
301: DVIKDRFPSL RGFLIKYKDP EGDLVTITAT NELNLAASNN DKLGSLRIYI AEVHPDQEPT YDGMKVESDK ASTSFENWIF QFAQMFKNHV GFDSDSYLDL
401: HDLGMKLYTE AMEEAVTGED AQKLFEIAAD KFREMGALAM FNWGNVHMSK ARKQVYFPED ASTEAVIEAA FVWTLNEYNK AAEKYEEALK IKPDFYEALI
501: ALGQEQFEHA KLLWYHALKR KVDIESEVSK EVLMLYNKAE DSMEKGMQIW EEMEEGRLNG ISKYDKEKSL LHKMELFSEE QTANMSSQIN LLWGSLLYER
601: SIVEYKLGLL TWEECLEVAV EKFELAGASS TDVAVMVKSH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QTGVPSFRLE PMFRRRAPKL HDILENVFSG
701: SG

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.