Factsheet for TraesCS5B01G160600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT4G32070.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT4G32070.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT4G32070.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G163200.1	Wheat	cytosol	98.4	98.4
TraesCS5D01G168200.1	Wheat	cytosol	96.15	96.15
HORVU5Hr1G050890.1	Barley	cytosol	77.86	77.61
KRG84467	Soybean	cytosol	8.24	59.23
KRH05201	Soybean	cytosol	18.18	56.48
GSMUA_Achr4P20360_001	Banana	cytosol	38.72	54.03
GSMUA_Achr7P05370_001	Banana	cytosol	37.65	53.99
EER96429	Sorghum	plastid	51.66	51.99
GSMUA_Achr3P00890_001	Banana	cytosol	37.11	51.64
Zm00001d019666_P001	Maize	plastid	49.95	50.38
GSMUA_Achr4P04120_001	Banana	cytosol	27.06	49.41
GSMUA_Achr9P22500_001	Banana	cytosol	36.26	49.2
VIT_11s0118g00490.t01	Wine grape	cytosol	35.4	48.82
TraesCS5B01G359500.1	Wheat	cytosol	36.04	48.35
Solyc08g029190.2.1	Tomato	nucleus	34.33	47.98
PGSC0003DMT400038437	Potato	cytosol	34.22	47.9
PGSC0003DMT400049152	Potato	cytosol	34.22	47.9
Solyc06g065910.2.1	Tomato	cytosol	34.22	46.72
PGSC0003DMT400067142	Potato	cytosol	33.9	46.28
CDX68815	Canola	cytosol, nucleus, plastid	33.16	45.39
CDY58928	Canola	cytosol	33.58	44.92
CDY38510	Canola	nucleus	33.26	44.68
VIT_04s0008g06310.t01	Wine grape	mitochondrion	35.4	44.07
CDY11535	Canola	nucleus	33.26	44.05
KRH37816	Soybean	cytosol	34.12	43.7
CDX75218	Canola	cytosol	33.37	43.03
KRH61724	Soybean	cytosol	33.37	42.98
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	33.16	42.94
CDX83226	Canola	cytosol	33.05	42.92
KRH20222	Soybean	nucleus	33.16	42.82
Bra000549.1-P	Field mustard	nucleus	34.87	42.61
Solyc07g007390.2.1	Tomato	nucleus	35.4	42.55
CDY13473	Canola	nucleus	32.51	42.05
CDX72344	Canola	nucleus	31.44	41.88
AT2G25290.4	Thale cress	cytosol	33.26	41.74
KRH03587	Soybean	nucleus	32.3	41.66
Bra023964.1-P	Field mustard	nucleus	32.3	41.54
Bra007805.1-P	Field mustard	nucleus	33.37	41.32
PGSC0003DMT400078952	Potato	cytosol	35.19	40.57
AT4G32070.1	Thale cress	nucleus	33.58	40.15
CDX70924	Canola	cytosol	24.39	35.79
CDY51850	Canola	cytosol	24.06	35.38
KRH52396	Soybean	cytosol	3.85	34.95
Bra006557.1-P	Field mustard	cytosol	24.71	34.74
KRH05202	Soybean	cytosol	12.83	34.48
TraesCS5B01G163300.1	Wheat	nucleus, plastid	25.35	30.19
AT5G20360.1	Thale cress	cytosol	25.99	30.04
TraesCS5B01G157700.1	Wheat	cytosol	13.05	28.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS5B01G160600	EnsemblPlants:TraesCS5B01G160600.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:295653333..295659673

Molecular Weight (calculated)

106532.0 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.825

Length

935 amino acids

Sequence
(BLAST)

001: MEEMPNEKKQ SESGSINCAP SSSSSQDIPN SLVNKDEDLA IGVVTELKKE GTPIEQKEER ASTAIDLKEE GTATQLKEEG ASKEDEAAVD SKEEGAKTEL
101: EEKMMLSQKR DYEKAIELKG EGTKLFQKRD YEGAALEFDK AIKLLPKGHD DIAFLHCNIA ACYMHMKPES YERAVDECNA ALEASLKYTN ALLKRARCFE
201: ALDRLDLACE DVQKVLSLEP NNVTALELYE SLREEMETEN LLENQVVSPV EPKAGFSKEK IQRKVSRRFR NNSIVEEVWL IHDDDEQEND EDGNEEECSE
301: ENHMENDLSN EGNDTREMPS RHNHDEDKRN TEKNQVKHGQ QKLGADDEGQ RLQHAPWDAE QMHHKETESQ NKHEKPLKEI KVRSGQDQQV MHTKQNQVAD
401: MDVRQKQIED VPTTSRSNQE IHTEMYERFI NGNQARRSLQ RHTSRGGDKQ EKQTSVKLAS PGGDEHQKQK RAYAADGETK TVKFVMGDDI RIALVPEDCS
501: LRQAINVARC KYSPHLKAML LKFQDIEGDL VTITSTEELR WVEDLKQGPA RLYIKEVSPE REITKDIVMP NISTATLERK HSISECGSAR HPAEDKSSSY
601: ADDWMVQFAR LFKNHVGFDS DALVDLRDLG TRLCIEAMED TITSEEAQEI FHAAEAKFQE MAALALFNWG NIHMSRAKKR LSLSEDASKE SVLSQVKTAY
701: ELACAEYVKA GKKFEDTVDV KPDFYEGLIA LGNQQFEQAK LSWRYGDACK VDMRTEVLEL FNRAEDNMEK GMEMWEGIEY LRLKGLSKSK KEKILLDKLG
801: LDGHQKDLTA DEAFEQASNM RSQLNISWAT ILYERSVVEF QLGLASWEES LTEAIEKFKT GGASLADISV MIKNHCANEK TQEGLSFKID EIVQAWNEMY
901: DAKKLENGSS SFRLEPLFRR QPSKLHNVLE HIKYT

Best Arabidopsis Sequence Match ( AT2G25290.2 )
(BLAST)

001: MGKPTGKKKN NNYTEMPPTE SSTTGGGKTG KSFDRSATKS FDDDMTIFIN RALELKEEGN KLFQKRDYEG AMFRYDKAVK LLPRDHGDVA YLRTSMASCY
101: MQMGLGEYPN AINECNLALE ASPRFSKALL KRARCYEALN KLDFAFRDSR VVLNMEPENV SANEIFERVK KVLVGKGIDV DEMEKNLVNV QPVGAARLRK
201: IVKERLRKKK KKSMTMTNGG NDGERKSVEA VVEDAKVDNG EEVDSGRKGK AIEEKKLEDK VAVMDKEVIA SEIKEDATVT RTVKLVHGDD IRWAQLPLDS
301: SVVLVRDVIK DRFPALKGFL IKYRDSEGDL VTITTTDELR LAASTREKLG SFRLYIAEVS PNQEPTYDVI DNDESTDKFA KGSSSVADNG SVGDFVESEK
401: ASTSLEHWIF QFAQLFKNHV GFDSDSYLEL HNLGMKLYTE AMEDIVTGED AQELFDIAAD KFQEMAALAM FNWGNVHMSK ARRQIYFPED GSRETILEKV
501: EAGFEWAKNE YNKAAEKYEG AVKIKSDFYE ALLALGQQQF EQAKLCWYHA LSGEVDIESD ASQDVLKLYN KAEESMEKGM QIWEEMEERR LNGISNFDKH
601: KELLQKLGLD GIFSEASDEE SAEQTANMSS QINLLWGSLL YERSIVEYKL GLPTWDECLE VAVEKFELAG ASATDIAVMV KNHCSSDNAL EGMGFKIDEI
701: VQAWNEMYDA KRWQIGVPSF RLEPLFRRRS PKLHDILENV FSGPQ

Arabidopsis Description

Phox1Phox1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.