Factsheet for TraesCS5B01G163300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G164700.1	Wheat	nucleus, plastid	96.82	97.06
TraesCS5D01G170500.1	Wheat	nucleus	95.54	96.15
HORVU5Hr1G051200.1	Barley	mitochondrion	93.76	90.86
VIT_00s0787g00010.t01	Wine grape	cytosol	13.63	75.35
VIT_00s1384g00010.t01	Wine grape	cytosol	5.73	75.0
Os09t0135400-01	Rice	nucleus	74.65	74.55
Zm00001d039966_P001	Maize	plastid	73.5	73.88
EES00364	Sorghum	plastid	69.81	70.26
GSMUA_Achr1P18260_001	Banana	nucleus	55.29	61.47
VIT_02s0012g02600.t01	Wine grape	cytosol	11.34	57.05
KRH02008	Soybean	nucleus	54.52	55.15
AT1G62390.1	Thale cress	plastid	51.34	53.66
KRH51148	Soybean	cytosol	52.23	53.32
CDY69227	Canola	cytosol	32.48	53.01
PGSC0003DMT400043113	Potato	cytosol	52.48	52.96
Solyc02g081200.1.1	Tomato	nucleus	52.36	52.83
Solyc02g036360.1.1	Tomato	nucleus	51.08	52.69
VIT_00s1008g00010.t01	Wine grape	cytosol	15.67	52.56
PGSC0003DMT400055266	Potato	cytosol	51.08	51.94
CDY30038	Canola	cytosol, plastid	52.99	50.36
VIT_17s0000g03920.t01	Wine grape	cytosol	12.74	50.0
Bra019727.1-P	Field mustard	cytosol	53.25	49.12
TraesCS5B01G359500.1	Wheat	cytosol	32.23	36.3
TraesCS5B01G160600.1	Wheat	cytosol	30.19	25.35
TraesCS5B01G157700.1	Wheat	cytosol	11.34	20.99

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom
PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437
SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS5B01G163300	EnsemblPlants:TraesCS5B01G163300.1	TIGR:cd05992	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:301301549..301303906

Molecular Weight (calculated)

85635.1 Da

IEP (calculated)

5.736

GRAVY (calculated)

-0.467

Length

785 amino acids

Sequence
(BLAST)

001: MGKSGAKKKK PSPSAAAAAA TTTTTAAKSP PAAAEQKAPP PAPPVANGAA QHQAQADPGV LLRRAHELKE EGNRLFQSRD YAGALRQYEL ALRLAPRGHP
101: DRAVFHSNRA ACLLQLRPVD HKAVAEECSL ALQAEPRFPR ALLRRARALE ALGRHELALA DTLALLALDP NHRDAIDLSH RLRSRISSSS SSASAVSTHE
201: PTSRPSPAAL GASAVVAGLG PSLPSRPFPK KQSPPSPPPQ QQQPGPAMTK FNSSPAPKLV PFSNSPSSSA KASTADISQK TVPALSVPST QPVTETSLIN
301: RKVVTRWRPL KLVYGHDIRL GEMPEKCSFQ TLREVVAKRF PSSKAVLMKY KDADGDLVTI TCTSELRLAE ACGVGTDAME GDTKLPMLRL HIVEVSPEQE
401: PPLPTEEQKL EEEELLITGE DSSSHISAEV ANAEVTKPGP ENGVAEQSTL AGKKDCGHAE CKEAEIDDWL LQFAELFRNQ VGIDADAHLD LHELGMELCS
501: EALEETVTSE EAQSLFEMAA AKFQEVAALA LFNWGNVHMC AARKRIPLDE SSPKEIMSAQ LRTAYDWVLE RYALAGHKYE EALNIKQDFY EGLLALGQQH
601: FETAKLHWSF ALADKVDLST WDSSETFKLF DSAEEKMRAA TEMWEKVEEQ RMLELKTPGA TEKDEVLKKR KKQHSADGQG ELTPEEAAEQ AAVMRQQIHL
701: FWGNMLFERS QVEFKLVVGD WKKNLDASVE RFKLAGASES DISMVLKNHF SNAAVSECEE KKDMPSATGS SQTSDGIDDE SVVES

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.