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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400043113 Potato cytosol 96.79 96.79
VIT_00s1384g00010.t01 Wine grape cytosol 6.81 88.33
VIT_00s0787g00010.t01 Wine grape cytosol 15.94 87.32
Solyc02g036360.1.1 Tomato nucleus 78.02 79.76
KRH02008 Soybean nucleus 70.57 70.75
KRH51148 Soybean cytosol 67.22 68.01
AT1G62390.1 Thale cress plastid 62.85 65.11
VIT_02s0012g02600.t01 Wine grape cytosol 12.72 63.46
CDY69227 Canola cytosol 37.92 61.33
VIT_00s1008g00010.t01 Wine grape cytosol 17.74 58.97
GSMUA_Achr1P18260_001 Banana nucleus 52.57 57.93
VIT_17s0000g03920.t01 Wine grape cytosol 14.52 56.5
CDY30038 Canola cytosol, plastid 59.38 55.93
Bra019727.1-P Field mustard cytosol 60.67 55.46
TraesCS5D01G170500.1 Wheat nucleus 52.83 52.69
TraesCS5A01G164700.1 Wheat nucleus, plastid 52.96 52.62
Zm00001d039966_P001 Maize plastid 52.7 52.5
TraesCS5B01G163300.1 Wheat nucleus, plastid 52.83 52.36
EES00364 Sorghum plastid 51.29 51.15
HORVU5Hr1G051200.1 Barley mitochondrion 53.08 50.99
Os09t0135400-01 Rice nucleus 51.29 50.76
Solyc08g029190.2.1 Tomato nucleus 34.83 40.51
Solyc06g065910.2.1 Tomato cytosol 34.32 38.98
Solyc07g007390.2.1 Tomato nucleus 34.96 34.96
Protein Annotations
Gene3D:1.25.40.10MapMan:20.2.4.5Gene3D:3.10.20.90GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR000270InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734UniProt:K4B9Z0InterPro:PB1_dom
PFAM:PF00564PFscan:PS50005PFscan:PS50293PFscan:PS51745PANTHER:PTHR22904PANTHER:PTHR22904:SF437
SMART:SM00028SMART:SM00666SUPFAM:SSF48452SUPFAM:SSF54277EnsemblPlantsGene:Solyc02g081200.1EnsemblPlants:Solyc02g081200.1.1
InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI00027675C5SEG:seg:
Description
No Description!
Coordinates
chr2:-:45254381..45256717
Molecular Weight (calculated)
85539.1 Da
IEP (calculated)
5.513
GRAVY (calculated)
-0.517
Length
778 amino acids
Sequence
(BLAST)
001: MGKSGGRKKK AGISQNQNQN QGAVGNSHSP VVNGSVDLDS SIFSKRAHEL KEEGNKRFQA KDYVGALEQY ENALKLTPKT HPDRAVFHSN RAACLMQMKP
101: IDYDSVVSEC TMALQVQPSY VRALLRRARA FEAVGKYEMA MQDVQILLGA DPNHRDALEI AGRLRMALGP RPEAQQDLQS RPSPAALGAS AVGAAPIAGL
201: GPCLPARPMS KKPAPLGGAS AISVNNKPEK PYQVTPAENG PHAKVQLPKV VLKPANGPSR PHADRNKDGQ REKASLSASS AVHGHSKDVA IRWRPLKLVY
301: DHDIRLAQMP VTCSFRVLRD IVSKRFPMSK SVLVKYKDSD GDLVTITCTA ELRSAESWVD GLLPKDPDAD KTGAIGLLRL HVVEVSPEQE PALLEEEEEK
401: PVESEGSKGD DSGSHSSISD LVVETVDNES NKAEKVTITE KAATAENPDC KEVEMDDWLF EFAQLFRTHV GIDPDAHIDL HELGMELCSE ALEETVTSEE
501: AQVLFDKAAL KFQEVAALAF FNWGNVHMCS ARKRIPIDDS ASKEMMATQL QAAYDWVKEK YSLAKEKYEE ALLIKPDFYE GLLALGQQQF EMAKLYWSFI
601: LAKKEDLSNW DPTETLALFD SAELKMKAAT EMWEKIEEQR ANELKDPSTS KKDELLRRRK KQASGPESEA SAVAGPAEIS ADEAAEQAAV MRSQIHLFWG
701: NMLFERSQVE CKLALDGWKK NLDTAVERFK LAGASESDIS TVLKNHCSNE EAAEGSKQMV ESLNTDAAAN HKNDASQA
Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)
001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P
Arabidopsis Description
Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.