Factsheet for TraesCS5D01G170500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G164700.1	Wheat	nucleus, plastid	98.08	97.7
TraesCS5B01G163300.1	Wheat	nucleus, plastid	96.15	95.54
HORVU5Hr1G051200.1	Barley	mitochondrion	94.1	90.62
VIT_00s0787g00010.t01	Wine grape	cytosol	13.59	74.65
Zm00001d039966_P001	Maize	plastid	74.62	74.52
VIT_00s1384g00010.t01	Wine grape	cytosol	5.64	73.33
Os09t0135400-01	Rice	nucleus	73.85	73.28
EES00364	Sorghum	plastid	71.03	71.03
GSMUA_Achr1P18260_001	Banana	nucleus	56.54	62.46
VIT_02s0012g02600.t01	Wine grape	cytosol	11.41	57.05
KRH02008	Soybean	nucleus	54.36	54.64
KRH51148	Soybean	cytosol	52.69	53.45
AT1G62390.1	Thale cress	plastid	51.03	53.0
Solyc02g081200.1.1	Tomato	nucleus	52.69	52.83
CDY69227	Canola	cytosol	32.56	52.81
PGSC0003DMT400043113	Potato	cytosol	52.56	52.7
Solyc02g036360.1.1	Tomato	nucleus	51.41	52.69
PGSC0003DMT400055266	Potato	cytosol	51.54	52.07
VIT_00s1008g00010.t01	Wine grape	cytosol	15.51	51.71
CDY30038	Canola	cytosol, plastid	53.46	50.48
VIT_17s0000g03920.t01	Wine grape	cytosol	12.69	49.5
Bra019727.1-P	Field mustard	cytosol	53.72	49.24
TraesCS5D01G366100.1	Wheat	cytosol	32.56	36.55
TraesCS5D01G168200.1	Wheat	cytosol	30.51	25.45
TraesCS5D01G165100.1	Wheat	cytosol	10.0	20.26

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom
PFAM:PF00564	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028
SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
EnsemblPlantsGene:TraesCS5D01G170500	EnsemblPlants:TraesCS5D01G170500.1	TIGR:cd05992	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:267236091..267238433

Molecular Weight (calculated)

85227.7 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.473

Length

780 amino acids

Sequence
(BLAST)

001: MGKSGAKKKK PSPSAAATTT AAKSPPAAAE QKAPPPAPPV ANGAAQHQAP ADPGVLLRRA HELKEEGNRL FQSRDYAGAL RQYELALHLA PRGHPDRAVF
101: HSNRAACLLQ LRPVDHKAVA EECSLALQAE PRFPRALLRR ARALEALGRY ELALADTLAL LALDPNHRDA IDLSHRLRSR ISSSSSSSAS AAPTHEPTSR
201: PSPAALGASA VVAGLGPSLP SRPFPKKQSP PSPPPPLQQP GPAMTKFNSS PAPKLVPFSN SPSSSAKAST ADISQKTVPA LSVPSTQPVT ETSLINRKVV
301: TRWRPLKLVY GHDIRLGEMP EKCSFQTLRE VVAKRFPSSK AVLMKYKDAD GDLVTITCTS ELRLAEACGV GTDAMEGDTK LPMLRLHIVE VSPEQEPPLP
401: TEEQKLEEEE LLITGEDSSS HTSAEVANAE MTKPDLENGV AEQSTLTGKK DCGHAECKEA EIDDWLLQFA ELFRNQVGID ADAHLDLHEV GMELCSEALE
501: ETVTSEEAQS LFEMAAAKFQ EVAALALFNW GNVHMCAARK RIPLDESSPK EIMSAQLRTA YDWVLERYAL AGHKYEEALN IKQDFYEGLL ALGQQHFETA
601: KLHWSFALAD KVDLSTWDSS ETFKLFDSAE EKMRAATEMW EKVEEQRMLE LKTPGATEKD EVLKKRKKQH SADGQGELTP EEAAEQTAVM RQQIHLFWGN
701: MLFERSQVEF KLVVGDWKKN LDASVERFKL AGASESDIST VLKNHFSNAV SECEEKKVMP SGTGSSQTSD GIDDESVVES

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.