Factsheet for PGSC0003DMT400043113

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081200.1.1	Tomato	nucleus	96.79	96.79
VIT_00s1384g00010.t01	Wine grape	cytosol	6.81	88.33
VIT_00s0787g00010.t01	Wine grape	cytosol	15.94	87.32
PGSC0003DMT400055266	Potato	cytosol	79.31	79.92
KRH02008	Soybean	nucleus	70.82	71.01
KRH51148	Soybean	cytosol	67.22	68.01
AT1G62390.1	Thale cress	plastid	62.6	64.85
VIT_02s0012g02600.t01	Wine grape	cytosol	12.72	63.46
CDY69227	Canola	cytosol	37.66	60.91
VIT_00s1008g00010.t01	Wine grape	cytosol	17.74	58.97
GSMUA_Achr1P18260_001	Banana	nucleus	52.83	58.22
CDY30038	Canola	cytosol, plastid	59.9	56.42
VIT_17s0000g03920.t01	Wine grape	cytosol	14.4	56.0
Bra019727.1-P	Field mustard	cytosol	60.93	55.7
TraesCS5A01G164700.1	Wheat	nucleus, plastid	53.08	52.75
TraesCS5D01G170500.1	Wheat	nucleus	52.7	52.56
TraesCS5B01G163300.1	Wheat	nucleus, plastid	52.96	52.48
Zm00001d039966_P001	Maize	plastid	52.06	51.86
HORVU5Hr1G051200.1	Barley	mitochondrion	53.08	50.99
EES00364	Sorghum	plastid	50.9	50.77
Os09t0135400-01	Rice	nucleus	51.29	50.76
PGSC0003DMT400049152	Potato	cytosol	34.45	40.12
PGSC0003DMT400038437	Potato	cytosol	34.45	40.12
PGSC0003DMT400067142	Potato	cytosol	33.93	38.54
PGSC0003DMT400078952	Potato	cytosol	34.32	32.92

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102585150	MapMan:20.2.4.5	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BE42
InterPro:PB1_dom	PFAM:PF00564	EnsemblPlantsGene:PGSC0003DMG400016728	PGSC:PGSC0003DMG400016728	EnsemblPlants:PGSC0003DMT400043113	PFscan:PS50005
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF437	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00029506CA
RefSeq:XP_006348171.1	SEG:seg	:	:	:	:

Description

Octicosapeptide/Phox/Bem1p domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016728]

Coordinates

chr2:-:36866476..36869773

Molecular Weight (calculated)

85578.2 Da

IEP (calculated)

5.443

GRAVY (calculated)

-0.532

Length

778 amino acids

Sequence
(BLAST)

001: MGKSGGRKKK AGVSQNQNQN QGAVGNSHTP VVNGSVDLDS SIFSKRAHEL KEEGNKRFQA KDYVGALEQY ENALKLTPKT HPDRAVFHSN RAACLMQMKP
101: IDYDSVISEC TMALLVQPSY VRALLRRARA FEAVRKYEMA MQDVQILLGA DPNHRDALEI AGRLRMALGP RPEAQQDLQS RPSPAALGAS AVGAAPIAGL
201: GPCLPARPMS KKPAPLGGAS AISVNNKPEK PYQVTPAENG PQAKVQLPKV ILKPANGPSR PHADLNKDGQ REKASSSASS VVHGHSKDVA IRWRPLKLVY
301: DHDIRLAQMP VTCSFKVLRD IVGKRFPMSK SVLVKYKDSD GDLVTITCTA ELRSAESWVD GLLPKDPDAD KTDAIGMLRL HVVEVSPEQE PALLEEEEEK
401: PVESEGSKGD DSGSHSSISD SVVETVDNES NKAEKVTIKE KAATTENPDC KEVEMDDWLF EFAQLFRTHV GIDPDAHIDL HELGMELCSE ALEETVTSEE
501: AQVLFDKAAL KFQEVAALAF FNWGNVHMCS ARKRIPIDDS ASKEMMATQL QAAYDWVKEK YSLAKEKYEE ALLIKPDFYE GLLALGQQQF EMAKLYWSFI
601: LAKKEDLSNW DPTETLALFD SAELKMKAAT EMWEKIEEQR ANELKDPSAS KKDELLRRRK KQTSGPEGEA SAAGGPAEIS ADEAAEQAAV MRSQIHLFWG
701: NMLFERSQVE CKLALAGWKK NLDTAVERFK LAGASESDIS TVLKNHCSNE EAAEGSKQMV ESLNTDEGAN HKNDASQA

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.