Factsheet for VIT_00s1384g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0787g00010.t01	Wine grape	cytosol	98.33	41.55
VIT_17s0000g03920.t01	Wine grape	cytosol	88.33	26.5
VIT_00s1008g00010.t01	Wine grape	cytosol	100.0	25.64
CDY69227	Canola	cytosol	83.33	10.39
PGSC0003DMT400043113	Potato	cytosol	88.33	6.81
Solyc02g081200.1.1	Tomato	nucleus	88.33	6.81
KRH51148	Soybean	cytosol	86.67	6.76
AT1G62390.1	Thale cress	plastid	83.33	6.66
KRH02008	Soybean	nucleus	85.0	6.57
Solyc02g036360.1.1	Tomato	nucleus	83.33	6.57
VIT_02s0012g02600.t01	Wine grape	cytosol	16.67	6.41
GSMUA_Achr1P18260_001	Banana	nucleus	75.0	6.37
PGSC0003DMT400055266	Potato	cytosol	81.67	6.35
CDY30038	Canola	cytosol, plastid	83.33	6.05
Bra019727.1-P	Field mustard	cytosol	83.33	5.88
EES00364	Sorghum	plastid	75.0	5.77
TraesCS5B01G163300.1	Wheat	nucleus, plastid	75.0	5.73
TraesCS5D01G170500.1	Wheat	nucleus	73.33	5.64
Zm00001d039966_P001	Maize	plastid	73.33	5.63
TraesCS5A01G164700.1	Wheat	nucleus, plastid	73.33	5.62
Os09t0135400-01	Rice	nucleus	73.33	5.6
VIT_11s0118g00490.t01	Wine grape	cytosol	61.67	5.46
HORVU5Hr1G051200.1	Barley	mitochondrion	73.33	5.43
VIT_04s0008g06310.t01	Wine grape	mitochondrion	58.33	4.66

Protein Annotations

ArrayExpress:VIT_00s1384g00010	EMBL:FN595030	EnsemblPlants:VIT_00s1384g00010.t01	EnsemblPlantsGene:VIT_00s1384g00010	ProteinID:CCB45325	ProteinID:CCB45325.1
UniParc:UPI0002108C80	UniProt:F6GZD9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrUn:+:38933344..38933731

Molecular Weight (calculated)

6989.1 Da

IEP (calculated)

3.982

GRAVY (calculated)

-0.392

Length

60 amino acids

Sequence
(BLAST)

1: MDDWLFGFTQ LFRTHVGIDL DARIDLHELG MELCSEALEE TVTSEEAQRL FDKDAPKFQE

Best Arabidopsis Sequence Match ( AT1G62390.1 )
(BLAST)

001: MGKSGGRKKK SGGSNSNSSQ VNSSETSGLS KPSTIVNGGV DFDASIFLKR AHELKEEGNK KFQARDYVGA LEQYENGIKL IPKSHPDRAV FHSNRAACLM
101: QMKPIDYESV ISECSMALKS QPGFTRALLR RARAFEAVGK FDLAVQDVNV LLGSDPNHKD AGEISKRLKT ALGPHQDLQS RPSPAALGAS AALGGPIAGL
201: GPCLPSRNVH KKGVTSPVGS VSLPNASNGK VERPQVVNPV TENGGSVSKG QASRVVLKPV SHSPKGSKVE ELGSSSVAVV GKVQEKRIRW RPLKFVYDHD
301: IRLGQMPVNC RFKELREIVS SRFPSSKAVL IKYKDNDGDL VTITSTAELK LAESAADCIL TKEPDTDKSD SVGMLRLHVV DVSPEQEPML LEEEEEEVEE
401: KPVIEEVISS PTESLSETEI NTEKTDKEVE KEKASSSEDP ETKELEMDDW LFDFAHLFRT HVGIDPDAHI DLHELGMELC SEALEETVTS EKAQPLFDKA
501: SAKFQEVAAL AFFNWGNVHM CAARKRIPLD ESAGKEVVAA QLQTAYEWVK ERYTLAKEKY EQALSIKPDF YEGLLALGQQ QFEMAKLHWS YLLAQKIDIS
601: GWDPSETLNL FDSAEAKMKD ATEMWEKLEE QRMDDLKNPN SNKKEEVSKR RKKQGGDGNE EVSETITAEE AAEQATAMRS QIHLFWGNML FERSQVECKI
701: GKDGWNKNLD SAVERFKLAG ASEADIATVV KNHCSNEAAA TEGDEKKVPA P

Arabidopsis Description

Phox2Protein CLMP1 [Source:UniProtKB/Swiss-Prot;Acc:O48802]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.