CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	CDX90725	AT4G09570.1	19130088
AT4G32070.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	97.93	98.34
CDX68815	Canola	cytosol, nucleus, plastid	85.79	91.07
CDX72344	Canola	nucleus	72.41	74.79
CDY13473	Canola	nucleus	73.52	73.72
KRG84467	Soybean	cytosol	12.97	72.31
AT4G32070.1	Thale cress	nucleus	76.55	70.97
CDY11535	Canola	nucleus	68.41	70.25
CDY58928	Canola	cytosol	67.03	69.53
CDY38510	Canola	nucleus	65.1	67.82
CDX83226	Canola	cytosol	66.34	66.81
KRH05201	Soybean	cytosol	26.48	63.79
Solyc08g029190.2.1	Tomato	nucleus	53.93	58.45
PGSC0003DMT400038437	Potato	cytosol	53.52	58.08
PGSC0003DMT400049152	Potato	cytosol	53.52	58.08
PGSC0003DMT400067142	Potato	cytosol	54.21	57.37
Solyc06g065910.2.1	Tomato	cytosol	54.07	57.23
VIT_04s0008g06310.t01	Wine grape	mitochondrion	57.38	55.39
KRH61724	Soybean	cytosol	54.9	54.82
Os09t0556200-00	Rice	cytosol, plasma membrane	50.21	53.06
GSMUA_Achr7P05370_001	Banana	cytosol	46.9	52.15
GSMUA_Achr4P20360_001	Banana	cytosol	48.0	51.94
GSMUA_Achr3P00890_001	Banana	cytosol	48.0	51.79
KRH52396	Soybean	cytosol	7.31	51.46
Zm00001d021400_P001	Maize	cytosol	48.55	51.24
EER97166	Sorghum	cytosol	48.41	50.72
GSMUA_Achr4P04120_001	Banana	cytosol	35.72	50.59
TraesCS5D01G366100.1	Wheat	cytosol	47.59	49.64
TraesCS5A01G357000.1	Wheat	cytosol	47.59	49.64
HORVU5Hr1G088290.2	Barley	cytosol	47.03	48.92
TraesCS5B01G359500.1	Wheat	cytosol	47.03	48.92
GSMUA_Achr9P22500_001	Banana	cytosol	44.83	47.17
Os08t0296900-01	Rice	cytosol	48.41	45.35
KRH05202	Soybean	cytosol	21.38	44.54
Zm00001d024424_P001	Maize	cytosol	45.24	44.26
EES13437	Sorghum	cytosol	44.55	43.47
Zm00001d037923_P001	Maize	cytosol	8.55	38.27
CDY51850	Canola	cytosol	32.83	37.42
CDX70924	Canola	cytosol	32.83	37.36
EER96429	Sorghum	plastid	44.97	35.09
Zm00001d019666_P001	Maize	plastid	43.86	34.3
CDY69227	Canola	cytosol	22.48	33.89
TraesCS5D01G168200.1	Wheat	cytosol	43.17	33.48
TraesCS5B01G160600.1	Wheat	cytosol	43.03	33.37
TraesCS5A01G163200.1	Wheat	cytosol	42.9	33.26
HORVU5Hr1G050890.1	Barley	cytosol	42.76	33.05
CDY30038	Canola	cytosol, plastid	34.9	30.63
TraesCS5D01G165100.1	Wheat	cytosol	13.79	25.97
HORVU5Hr1G050130.1	Barley	cytosol	12.83	23.43
TraesCS5B01G157700.1	Wheat	cytosol	12.83	21.93
TraesCS5A01G160000.1	Wheat	cytosol	11.72	21.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EnsemblPlants:CDX75218	ProteinID:CDX75218	ProteinID:CDX75218.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00121068001	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005	PFscan:PS50293
PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE1AF8	SEG:seg

Description

BnaA01g04840D

Coordinates

chrLK031804:-:166156..168409

Molecular Weight (calculated)

81771.4 Da

IEP (calculated)

5.351

GRAVY (calculated)

-0.514

Length

725 amino acids

Sequence
(BLAST)

001: MGKPTAKKTP KDAPGGGGGG AKSGKTNHRS ASRAFDEDME IFINRAAELK EEGNKLFQKR DNEGAMLCYD KAVKLLPKNH IDVAYLRTSM ASCYMQMGLG
101: EYPNAISECN SALEASPRYS RALLRRARCY EALNKLDYAF RDARIVLNME PENVNANEVF DRVKKALGEK GVDVEEMEQS FVDVMPLGTA RLKKVVKKSK
201: KKKKEDEVKG NRAVVESPKA IIAETKEEKK RTTFKKQKKK SGNKGGDEKV VVMDKEVIAS EIVEGGKEET TVTRTVKLVH GDDIRWAQLP LDSSIRLVRD
301: VIKDRFPALK GFLIKYKDTE GDLVTITTSD ELKLAASSHD KLASLRLYIA EANPEQEPSY DGAEKDVKRV SSVADSGSVG ESSCFENWIF QFAQLFKNHV
401: GFDSDSYLDL HDLGMKLYTE AMEDAVTGEE AQVLFEIAAD KFQEMAALAM FNWGNAHMSK ARKQVSFPED ASREAVIEAV EAAFVWTRNE YNKAAKRYEE
501: AVKIKPDFYE ALIALGQEQF EQAKLLWYHA LKGKVDIESE VSQEVLMLYN KAEDSMERGM QIWEEMEERR LNGISKLDLQ RALLHKMGLD GWCREGADEE
601: TVEQTANMSS QINLLWGSIL YERSIVEYKL GLTTWEECLE VAVEKFELAG ASATDIAVMV KNHCSSESAL EGMGFKIDEI VQAWNEMYDA KRWQMGVPSF
701: RLEPMFRRRA PKLHDILENV FSESA

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.