CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32070.1	CDX90725	AT4G09570.1	19130088
AT4G32070.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023964.1-P	Field mustard	nucleus	90.04	89.55
CDX72344	Canola	nucleus	83.82	86.32
CDX68815	Canola	cytosol, nucleus, plastid	71.92	76.13
CDX75218	Canola	cytosol	73.72	73.52
KRG84467	Soybean	cytosol	13.0	72.31
AT4G32070.1	Thale cress	nucleus	74.0	68.41
CDY11535	Canola	nucleus	66.67	68.27
CDY58928	Canola	cytosol	65.56	67.81
CDY38510	Canola	nucleus	65.01	67.53
CDX83226	Canola	cytosol	64.73	65.0
KRH05201	Soybean	cytosol	25.45	61.13
Solyc08g029190.2.1	Tomato	nucleus	52.42	56.65
PGSC0003DMT400038437	Potato	cytosol	52.14	56.44
PGSC0003DMT400049152	Potato	cytosol	52.14	56.44
Solyc06g065910.2.1	Tomato	cytosol	51.87	54.74
PGSC0003DMT400067142	Potato	cytosol	51.59	54.45
VIT_04s0008g06310.t01	Wine grape	mitochondrion	56.15	54.06
KRH61724	Soybean	cytosol	52.7	52.48
GSMUA_Achr4P20360_001	Banana	cytosol	47.3	51.04
GSMUA_Achr7P05370_001	Banana	cytosol	45.5	50.46
Os09t0556200-00	Rice	cytosol, plasma membrane	47.86	50.44
GSMUA_Achr3P00890_001	Banana	cytosol	46.06	49.55
GSMUA_Achr4P04120_001	Banana	cytosol	34.99	49.41
Zm00001d021400_P001	Maize	cytosol	46.61	49.05
EER97166	Sorghum	cytosol	46.75	48.84
KRH52396	Soybean	cytosol	6.92	48.54
TraesCS5D01G366100.1	Wheat	cytosol	46.06	47.91
TraesCS5A01G357000.1	Wheat	cytosol	45.92	47.77
TraesCS5B01G359500.1	Wheat	cytosol	45.64	47.35
HORVU5Hr1G088290.2	Barley	cytosol	45.5	47.2
GSMUA_Achr9P22500_001	Banana	cytosol	41.91	43.98
KRH05202	Soybean	cytosol	21.16	43.97
Os08t0296900-01	Rice	cytosol	46.61	43.54
EES13437	Sorghum	cytosol	43.85	42.66
Zm00001d024424_P001	Maize	cytosol	42.6	41.57
Zm00001d037923_P001	Maize	cytosol	8.71	38.89
CDX70924	Canola	cytosol	34.16	38.78
CDY51850	Canola	cytosol	34.02	38.68
EER96429	Sorghum	plastid	43.57	33.91
Zm00001d019666_P001	Maize	plastid	43.15	33.66
HORVU5Hr1G050890.1	Barley	cytosol	42.46	32.73
TraesCS5D01G168200.1	Wheat	cytosol	42.32	32.73
TraesCS5B01G160600.1	Wheat	cytosol	42.05	32.51
TraesCS5A01G163200.1	Wheat	cytosol	41.91	32.41
CDY69227	Canola	cytosol	21.3	32.02
CDY30038	Canola	cytosol, plastid	33.33	29.18
TraesCS5D01G165100.1	Wheat	cytosol	14.25	26.75
HORVU5Hr1G050130.1	Barley	cytosol	14.25	25.94
TraesCS5A01G160000.1	Wheat	cytosol	12.59	22.98
TraesCS5B01G157700.1	Wheat	cytosol	13.14	22.41

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	UniProt:A0A078FMA7	EnsemblPlants:CDY13473	ProteinID:CDY13473
ProteinID:CDY13473.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00077774001	InterPro:IPR000270
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50293
PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF419	SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452
SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EE9396	SEG:seg

Description

BnaA03g51910DBnaA03g51910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMA7]

Coordinates

chrLK032035:-:537616..540522

Molecular Weight (calculated)

82400.8 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.661

Length

723 amino acids

Sequence
(BLAST)

001: MGKPAAKKKT PETPKDASGG GGKSGKANHR STSRAFDEDM EIFINRALEL KEEGNKLFQK RDNEGAMLTY DKAVKLLPKE HIDIAYLRTS MASCYMRMGL
101: GEYPNAINEC NLALEASPRY SKALVRRSRC YEALNKLDYA FRDVRIVLNR EPENVSANEV FERVKKALVE KGIDVGEMEK SFVKKVVKKS KKKKSGVESP
201: KIFKRDEAES KDKPKEEEEE KSDKKSEIDA KMSGNKEEKK PKFKKQKKRN GNKAGGEERK MEDDKVVVMD KEVIASEFLE QSTVTRTVKL VYGDDIRWAE
301: LPLDSSVRLV RDVIKDRFPS LRGFLIKYKD PEGDLVTITA TSELNLAASN NDKLGSLRLY IAEVHPDQEP SYDGMKVVKR SSVGEYVESD KASTSFENWI
401: FQFAQMFKNH VGFDSDSYLD LHDLGMKLYT EAMEDAVTGE DAQELFGIAA DKFQEMGALA MFNWGNVHMS KARKQVYFPE DASTEAVIEA VEAAFVWTQN
501: EYNKAAEKYE EALKIKPDFH EALIALGQQQ FEQAKLLWYH AQKSKVDTES EVSQDVLKLY NKAEDSMERG MQIWEEMEER RLNGISKYDK MELFSEVSDE
601: EKTANMSSQI NLLWGSLLYE RSIVEYKLGL LTWEECLEVA VEKFELAGAS STDVAVMVKN HCSSESALEG MGFKIDEIVQ AWNEMYDAKR WQTGVPSFRL
701: EPMFRRRAPK LHDILENVFS GSA

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.