Factsheet for Bra006557.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51850	Canola	cytosol	88.72	92.77
AT5G20360.1	Thale cress	cytosol	63.91	52.53
VIT_11s0118g00490.t01	Wine grape	cytosol	44.06	43.22
KRH03587	Soybean	nucleus	44.51	40.83
KRH20222	Soybean	nucleus	43.91	40.33
KRH37816	Soybean	cytosol	42.71	38.9
GSMUA_Achr3P00890_001	Banana	cytosol	39.1	38.69
GSMUA_Achr4P20360_001	Banana	cytosol	38.95	38.66
GSMUA_Achr7P05370_001	Banana	cytosol	37.89	38.65
Solyc07g007390.2.1	Tomato	nucleus	43.01	36.76
EER97166	Sorghum	cytosol	37.74	36.27
Zm00001d021400_P001	Maize	cytosol	37.44	36.24
GSMUA_Achr4P04120_001	Banana	cytosol	27.67	35.94
Os09t0556200-00	Rice	cytosol, plasma membrane	36.84	35.71
PGSC0003DMT400078952	Potato	cytosol	43.01	35.27
TraesCS5A01G357000.1	Wheat	cytosol	36.84	35.25
TraesCS5D01G366100.1	Wheat	cytosol	36.84	35.25
TraesCS5B01G359500.1	Wheat	cytosol	36.84	35.15
HORVU5Hr1G088290.2	Barley	cytosol	36.84	35.15
GSMUA_Achr9P22500_001	Banana	cytosol	35.94	34.69
Bra000549.1-P	Field mustard	nucleus	38.65	33.59
Bra007805.1-P	Field mustard	nucleus	38.05	33.51
Bra023964.1-P	Field mustard	nucleus	36.09	33.01
Bra011320.1-P	Field mustard	cytosol, nucleus, plastid	35.79	32.96
Os08t0296900-01	Rice	cytosol	35.94	30.88
Zm00001d024424_P001	Maize	cytosol	33.38	29.96
EES13437	Sorghum	cytosol	33.23	29.74
EER96429	Sorghum	plastid	35.19	25.19
Zm00001d019666_P001	Maize	plastid	34.89	25.03
TraesCS5D01G168200.1	Wheat	cytosol	34.89	24.81
TraesCS5A01G163200.1	Wheat	cytosol	34.74	24.71
TraesCS5B01G160600.1	Wheat	cytosol	34.74	24.71
HORVU5Hr1G050890.1	Barley	cytosol	34.74	24.63
Bra019727.1-P	Field mustard	cytosol	31.13	24.32
HORVU5Hr1G050130.1	Barley	cytosol	14.29	23.93
TraesCS5D01G165100.1	Wheat	cytosol	13.83	23.9
TraesCS5A01G160000.1	Wheat	cytosol	13.68	22.98
TraesCS5B01G157700.1	Wheat	cytosol	14.44	22.64
Zm00001d037923_P001	Maize	cytosol	4.96	20.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:20.2.4.5	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra006557	EnsemblPlants:Bra006557.1	EnsemblPlants:Bra006557.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:M4CQR6	InterPro:PB1_dom	PFAM:PF00564	PFscan:PS50005
PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF392	SMART:SM00028	SMART:SM00666
SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002540041
SEG:seg	:	:	:	:	:

Description

AT5G20360 (E=2e-116) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA03:-:4036371..4038437

Molecular Weight (calculated)

76133.2 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.470

Length

665 amino acids

Sequence
(BLAST)

001: MEKLKGKLEE PETSQSHQDD PKVEPLDYIS KAQSLKEAGN KLFQRRDYDN AMLKYKEAID VLPENHVEIS HIRSNMASCY MHSDPGEFAK AIHECDLALT
101: ITPDYTKALL KRARCYEALN KLDLALRDVC LVSELDPNNP MASEIAVKLK RTLEGKGLMV KDSVIELPPD YVEPVAAHLA LWAKKGKARV KKKNRSSSSQ
201: VVQEKSDDVE NAEKKKNNNL ADVKGKEKII DNQEEEVIVE DKSVLKKTVK FVYSEDVRLA ELPLNCTLFH LREVVHERFP SLRAVHIKYK DQEGDLVTIT
301: TDEELRISEE VSRLDTTMRM RFYVVEVSPE QDPFFGRLVE MKKLKITADS FKAKANGKGT CKIEDWMVEF ARLFKIQANV DSDDTSLNLQ ELGMKLNSEA
401: MEEVVTSEEA QEPFEKAAQQ FQELVARSLL KLGHVHMSGA RKRLSLLRES SSQVVETAYE FALKEHAKAK EKYEEAMRVK PDLLEVFLAL ALQQFEEARL
501: SWYYVLLSGI DLKTWPYGDV VQLYRSAKSN IKKSMEGLKR LGSSKAADKA AKLKSWLDVL SCAVLYERSM MEYKLDLPTW QENLEGAVVI LELAGTCEED
601: VAALIRDDYV TDNTLRDLRF HVDEVLQIFH EIYEAKEWRN GIPSDQFEEI LKRRIANIFH VSHTT

Best Arabidopsis Sequence Match ( AT5G20360.6 )
(BLAST)

001: MEKQNEEIST DDAETSQSQL VDDSKVETLD DCVSKAQGLK EEGNKLFQKR DYDGAMFKYG EAIKILPKDH VEVSHVRANV ASCYMQLEPG EFAKAIHECD
101: LALSVTPDHN KALLKRARCY EALNKLDLAL RDVCMVSKLD PKNPMASEIV EKLKRTLESK GLRINNSVIE LPPDYVEPVG ASPAALWAKL GKVRVKKTKK
201: SNQVEEKSEG EGEDVEPEKK NNVLAEKGKE KIKMKVKGKQ SDKRSDTSKE QEKVIIEEEL LVIGVEDVNK DVKFVYSDDI RLAELPINCT LFKLREVVHE
301: RFPSLRAVHI KYRDQEGDLV TITTDEELRM SEVSSRSQGT MRFYVVEVSP EQDPFFGRLV EMKKLKITAD SFKAKVNGRG GCKVEDWMIE FAHLFKIQAR
401: IDSDRCLNLQ ELGMKLNSEA MEEVVTSDAA QGPFDRAAQQ FQEVAARSLL NLGYVHMSGA RKRLSLLQGV SGESVSEQVK TAYECAKKEH ANAKEKYEEA
501: MKIKPECFEV FLALGLQQFE EARLSWYYVL VSHLDLKTWP YADVVQFYQS AESNIKKSME VLENLETGKE SEPSQAGKTD CLTHEKDLGS STQNNPAKEA
601: GRLKSWIDIL LCAVLYERSI MEYKLDQPFW RESLEAAMEK FELAGTCKDD VVEIISEDYV AGNTLRDIRF HMEEIIQIFD EIYEAKHWTN GIPSDQLEEI
701: LKRRAENIFH VPNIAIQRG

Arabidopsis Description

Phox3Protein PHOX3 [Source:UniProtKB/Swiss-Prot;Acc:F4K487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.