CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20222	Soybean	nucleus	87.17	87.29
KRH37816	Soybean	cytosol	73.38	72.88
KRG84467	Soybean	cytosol	12.28	68.46
VIT_11s0118g00490.t01	Wine grape	cytosol	60.0	64.16
KRH05201	Soybean	cytosol	24.14	58.14
Solyc07g007390.2.1	Tomato	nucleus	59.72	55.66
GSMUA_Achr4P20360_001	Banana	cytosol	50.07	54.18
GSMUA_Achr7P05370_001	Banana	cytosol	48.69	54.14
GSMUA_Achr3P00890_001	Banana	cytosol	49.52	53.42
PGSC0003DMT400078952	Potato	cytosol	59.17	52.9
Os09t0556200-00	Rice	cytosol, plasma membrane	48.14	50.87
KRH61724	Soybean	cytosol	50.07	50.0
GSMUA_Achr9P22500_001	Banana	cytosol	47.45	49.93
EER97166	Sorghum	cytosol	47.45	49.71
Zm00001d021400_P001	Maize	cytosol	46.9	49.49
KRH52396	Soybean	cytosol	6.9	48.54
TraesCS5D01G366100.1	Wheat	cytosol	46.48	48.49
TraesCS5A01G357000.1	Wheat	cytosol	46.34	48.35
GSMUA_Achr4P04120_001	Banana	cytosol	34.07	48.24
HORVU5Hr1G088290.2	Barley	cytosol	46.34	48.21
TraesCS5B01G359500.1	Wheat	cytosol	46.21	48.06
CDY51850	Canola	cytosol	39.31	44.81
Bra006557.1-P	Field mustard	cytosol	40.83	44.51
CDX70924	Canola	cytosol	38.34	43.64
EES13437	Sorghum	cytosol	44.28	43.2
Os08t0296900-01	Rice	cytosol	45.93	43.02
KRH05202	Soybean	cytosol	20.14	41.95
Zm00001d024424_P001	Maize	cytosol	42.76	41.84
Zm00001d037923_P001	Maize	cytosol	8.83	39.51
AT5G20360.1	Thale cress	cytosol	43.45	38.94
KRH02008	Soybean	nucleus	36.28	33.89
KRH51148	Soybean	cytosol	35.45	33.42
EER96429	Sorghum	plastid	42.62	33.26
Zm00001d019666_P001	Maize	plastid	42.21	33.01
TraesCS5D01G168200.1	Wheat	cytosol	42.21	32.73
HORVU5Hr1G050890.1	Barley	cytosol	41.93	32.41
TraesCS5B01G160600.1	Wheat	cytosol	41.66	32.3
TraesCS5A01G163200.1	Wheat	cytosol	41.52	32.19
TraesCS5A01G160000.1	Wheat	cytosol	12.69	23.23
HORVU5Hr1G050130.1	Barley	cytosol	12.55	22.92
TraesCS5D01G165100.1	Wheat	cytosol	12.14	22.86
TraesCS5B01G157700.1	Wheat	cytosol	13.24	22.64

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100778972	MapMan:20.2.4.5	Gene3D:3.10.20.90	EMBL:ACUP02010354	EnsemblPlantsGene:GLYMA_17G107300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MU15	InterPro:IPR000270	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH03587	ProteinID:KRH03587	ProteinID:KRH03587.1	InterPro:PB1_dom
PFAM:PF00564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51745	PANTHER:PTHR22904	PANTHER:PTHR22904:SF392
SMART:SM00028	SMART:SM00666	SUPFAM:SSF48452	SUPFAM:SSF54277	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000233EC5C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:8422423..8427534

Molecular Weight (calculated)

82575.6 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.548

Length

725 amino acids

Sequence
(BLAST)

001: MGKKKKQVGE IEEDGKVGDS SPRAYDNDTM VFISMSQELK NEGNKLFQKR DLEGAILKYE NALKLLPKNH IDVSYLRSNM AACYMQMGLS EFPRAIHECD
101: LALQVTPKYS KALLKRARCY EALNRPDLAL RDASTVVKME PNNVMALEIS EKVKSALEEK GLRVNDTIIE LPPDYVEPPD ALPPEKVSKE KRRKKKKSNK
201: EEEKAPDDKI LEKQTEEKFE EKKAEGSIVV VEKKINTSKK KKAKGKTNEK KTDIKEVIEE RSNGRRNHVP KKSAKFIFGD DIRCAELPIN CSLFQLREVI
301: QDRFPSLGAV LVKYRDQEGD LVTITSDDEL RWAEAGSNGS IRLYIVEATP EQDPLFEKFK VKEVEVVGVN IAPENGCVGK AKEIISSSCI EDWIIQFSKL
401: FKNHVGFESD RYLDFHELGM KLYSEALEET VTSEEAQGLF DIAGDKFQEM TALALFNWGN VHMSRVRKKV YVTEDSSKEH LCEQIKSSYE CALEEYAKAG
501: EKYAAAIKIK SDFHEGFLAL GLQQFEQAKL SWYHALSSNA DLLTWPSTEV LHLYNNAEEN MEKGMQIWKE SEKQNLSKTS NSNDVRLHLQ NMGLDGLFKN
601: ISLDELAAQE AHMGSQINLL WGTMLYERSF VEFKLGLPIW HESLEVAVEK FELAGASQTD IAVILKNHCS NNTAVDGLAF KIDEIVQAWN EMYKAKKWQS
701: AVPSFRLEPL FRRRVSKTYH AFELA

Best Arabidopsis Sequence Match ( AT4G32070.1 )
(BLAST)

001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM
101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI
201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA
301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ
401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ
501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ
601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV
701: EKFELAGASA TDIAVMVKNH CSSESALEGM GFKIDEIVQA WNEMYDAKRW QMGVPSFRLE PMFRRRAPKL HDILENVFSG PV

Arabidopsis Description

Phox4Protein PHOX4 [Source:UniProtKB/Swiss-Prot;Acc:F4JTI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.