Factsheet for Zm00001d010017_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043268_P001	Maize	cytosol	87.5	96.55
Zm00001d051543_P001	Maize	plastid	58.48	78.92
Zm00001d002450_P001	Maize	cytosol	58.48	78.92
Zm00001d003896_P001	Maize	plastid	57.14	77.11
EES11363	Sorghum	cytosol	57.14	77.11
Zm00001d017719_P001	Maize	plastid	56.7	76.51
Solyc04g050370.1.1	Tomato	cytosol	23.21	76.47
Os02t0699600-01	Rice	nucleus	55.8	75.3
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	55.8	75.3
Zm00001d031348_P001	Maize	cytosol	55.8	75.3
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	55.36	75.15
TraesCS2B01G464300.1	Wheat	golgi, plastid	55.36	74.7
TraesCS2A01G443200.1	Wheat	cytosol	55.36	74.7
TraesCS2D01G442300.1	Wheat	cytosol	55.36	74.7
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	54.91	74.55
Solyc11g069440.1.1	Tomato	nucleus, plastid	53.57	72.29
Solyc11g065670.1.1	Tomato	cytosol	53.57	72.29
Solyc06g075180.1.1	Tomato	nucleus	53.57	72.29
PGSC0003DMT400008687	Potato	cytosol	53.57	72.29
PGSC0003DMT400083480	Potato	cytosol	53.57	72.29
PGSC0003DMT400020871	Potato	cytosol	53.57	72.29
VIT_06s0004g02840.t01	Wine grape	cytosol	53.12	71.69
VIT_08s0040g01870.t01	Wine grape	cytosol	53.12	71.69
VIT_13s0019g04300.t01	Wine grape	cytosol	52.68	71.08
TraesCS6B01G295500.1	Wheat	cytosol	40.18	70.87
CDY13296	Canola	cytosol	52.23	70.48
KRH32476	Soybean	endoplasmic reticulum	52.23	70.48
AT5G60670.1	Thale cress	cytosol	52.23	70.48
Bra003134.1-P	Field mustard	cytosol	52.23	70.48
GSMUA_Achr10P...	Banana	cytosol	52.23	70.48
CDY56698	Canola	cytosol	52.23	70.48
CDY52760	Canola	cytosol	52.23	70.48
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	51.79	69.88
KRH29917	Soybean	endoplasmic reticulum, nucleus	51.79	69.88
KRH19864	Soybean	endoplasmic reticulum	51.79	69.88
GSMUA_Achr8P23840_001	Banana	cytosol	51.79	69.88
Bra039782.1-P	Field mustard	cytosol	51.79	69.88
Bra039787.1-P	Field mustard	cytosol	51.79	69.88
CDX76214	Canola	cytosol	51.79	69.88
CDX78178	Canola	cytosol, extracellular	51.79	69.88
CDY30876	Canola	cytosol	51.79	69.88
AT3G53430.1	Thale cress	cytosol	51.34	69.28
AT2G37190.1	Thale cress	cytosol	51.34	69.28
Bra006998.1-P	Field mustard	cytosol	51.34	69.28
Bra017204.1-P	Field mustard	cytosol	51.34	69.28
Bra023104.1-P	Field mustard	cytosol	51.34	69.28
CDY46760	Canola	cytosol	51.34	69.28
CDY53628	Canola	cytosol	51.34	69.28
CDY70392	Canola	cytosol	51.34	69.28
Bra002460.1-P	Field mustard	cytosol	50.89	68.67
CDY31522	Canola	cytosol	50.89	68.67
Solyc04g050360.1.1	Tomato	cytosol	15.18	68.0
CDY27019	Canola	cytosol	50.0	67.07
GSMUA_Achr4P09610_001	Banana	cytosol	39.73	64.96
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	55.36	64.92
HORVU6Hr1G067870.1	Barley	cytosol, plastid	54.91	63.08
Solyc04g050410.1.1	Tomato	cytosol	12.05	57.45
GSMUA_Achr6P03690_001	Banana	cytosol	38.84	50.29
GSMUA_Achr7P19710_001	Banana	cytosol	39.29	46.56
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	21.43	40.34
Solyc04g050420.1.1	Tomato	cytosol	22.77	39.84
CDX91342	Canola	cytosol	9.38	39.62
Solyc04g050380.1.1	Tomato	plastid	24.55	38.73
Solyc04g050390.1.1	Tomato	plastid	23.66	36.81
Solyc04g050340.1.1	Tomato	cytosol	12.05	32.93
Solyc04g050430.1.1	Tomato	cytosol	12.5	30.77
GSMUA_Achr10P...	Banana	cytosol	16.52	29.84
CDX74982	Canola	nucleus	9.82	26.51
Bra005214.1-P	Field mustard	nucleus	9.82	26.51

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	ProteinID:AQK93238.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	UniProt:K7VUK8	PFAM:PD311621	PFAM:PF00298
PFAM:PF03946	PFAM:PF07807	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:RED_C
InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N
SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI000221D41B	EnsemblPlantsGene:Zm00001d010017	EnsemblPlants:Zm00001d010017_P001
EnsemblPlants:Zm00001d010017_T001	SEG:seg	:	:	:	:

Description

Putative ribosomal protein L11 family protein

Coordinates

chr8:-:95277830..95279023

Molecular Weight (calculated)

25190.2 Da

IEP (calculated)

9.980

GRAVY (calculated)

-0.858

Length

224 amino acids

Sequence
(BLAST)

001: MPPKLEASQV VEVFVRVTGG EETAKDWKGL RVTVKLTVQN RQAKVSVIPS AAALVIKALK EPERDRKKVK NIKHSGNISL DDVIEIAKTM RHRSMAKELA
101: GTVKEILGTC VSVGCTVDGK DPKDLQQEID DGEAKGRLHR WDFETEEEWA KYNDQKEAML KAAFQFGVKM QDGRKTRKQN KDQKLTNDLH KINKILARKK
201: GEKDGVEDGG HYDDDLPSSK KQRG

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.