CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07409	Sorghum	cytosol	99.4	99.4
EES10673	Sorghum	cytosol	99.4	99.4
Zm00001d002450_P001	Maize	cytosol	97.59	97.59
TraesCS6B01G295500.1	Wheat	cytosol	74.1	96.85
Os02t0699600-01	Rice	nucleus	95.78	95.78
TraesCS2A01G443200.1	Wheat	cytosol	95.18	95.18
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	95.18	95.18
TraesCS2B01G464300.1	Wheat	golgi, plastid	95.18	95.18
TraesCS2D01G442300.1	Wheat	cytosol	95.18	95.18
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	93.98	94.55
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	93.37	93.94
Solyc11g069440.1.1	Tomato	nucleus, plastid	90.96	90.96
Solyc11g065670.1.1	Tomato	cytosol	90.96	90.96
Solyc06g075180.1.1	Tomato	nucleus	90.96	90.96
Zm00001d031348_P001	Maize	cytosol	90.96	90.96
VIT_06s0004g02840.t01	Wine grape	cytosol	90.36	90.36
PGSC0003DMT400083480	Potato	cytosol	90.36	90.36
PGSC0003DMT400020871	Potato	cytosol	90.36	90.36
PGSC0003DMT400008687	Potato	cytosol	90.36	90.36
VIT_08s0040g01870.t01	Wine grape	cytosol	90.36	90.36
KRH32476	Soybean	endoplasmic reticulum	89.76	89.76
VIT_13s0019g04300.t01	Wine grape	cytosol	89.16	89.16
GSMUA_Achr10P...	Banana	cytosol	89.16	89.16
KRH19864	Soybean	endoplasmic reticulum	89.16	89.16
GSMUA_Achr8P23840_001	Banana	cytosol	88.55	88.55
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	87.95	87.95
KRH29917	Soybean	endoplasmic reticulum, nucleus	87.95	87.95
AT2G37190.1	Thale cress	cytosol	87.95	87.95
GSMUA_Achr4P09610_001	Banana	cytosol	72.29	87.59
AT3G53430.1	Thale cress	cytosol	87.35	87.35
Bra039787.1-P	Field mustard	cytosol	87.35	87.35
CDX76214	Canola	cytosol	87.35	87.35
CDY70392	Canola	cytosol	87.35	87.35
CDY46760	Canola	cytosol	87.35	87.35
Bra039782.1-P	Field mustard	cytosol	87.35	87.35
CDY30876	Canola	cytosol	87.35	87.35
Bra023104.1-P	Field mustard	cytosol	87.35	87.35
Bra017204.1-P	Field mustard	cytosol	87.35	87.35
AT5G60670.1	Thale cress	cytosol	86.75	86.75
CDY56698	Canola	cytosol	86.75	86.75
CDY13296	Canola	cytosol	86.75	86.75
CDY52760	Canola	cytosol	86.75	86.75
CDX78178	Canola	cytosol, extracellular	86.14	86.14
Bra003134.1-P	Field mustard	cytosol	86.14	86.14
Bra002460.1-P	Field mustard	cytosol	85.54	85.54
Bra006998.1-P	Field mustard	cytosol	85.54	85.54
CDY31522	Canola	cytosol	85.54	85.54
CDY53628	Canola	cytosol	84.94	84.94
CDY27019	Canola	cytosol	84.34	83.83
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	94.58	82.2
HORVU6Hr1G067870.1	Barley	cytosol, plastid	93.37	79.49
Solyc04g050370.1.1	Tomato	cytosol	31.33	76.47
Solyc04g050360.1.1	Tomato	cytosol	22.89	76.0
GSMUA_Achr6P03690_001	Banana	cytosol	70.48	67.63
GSMUA_Achr7P19710_001	Banana	cytosol	71.69	62.96
CDX91342	Canola	cytosol	19.28	60.38
Solyc04g050410.1.1	Tomato	cytosol	16.87	59.57
Zm00001d010017_P001	Maize	cytosol	77.11	57.14
Zm00001d043268_P001	Maize	cytosol	63.86	52.22
CDX74982	Canola	nucleus	24.1	48.19
Bra005214.1-P	Field mustard	nucleus	24.1	48.19
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	31.33	43.7
Solyc04g050420.1.1	Tomato	cytosol	31.33	40.62
Solyc04g050380.1.1	Tomato	plastid	33.73	39.44
Solyc04g050390.1.1	Tomato	plastid	32.53	37.5
GSMUA_Achr10P...	Banana	cytosol	24.7	33.06
Solyc04g050340.1.1	Tomato	cytosol	15.06	30.49
Solyc04g050430.1.1	Tomato	cytosol	15.66	28.57

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	EntrezGene:8071107	UniProt:C5YF43	EnsemblPlants:EES11363
ProteinID:EES11363	ProteinID:EES11363.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625
GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946
ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C
InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	EnsemblPlantsGene:SORBI_3006G201500	SUPFAM:SSF46906
SUPFAM:SSF54747	unigene:Sbi.14453	UniParc:UPI0001A86E5E	RefSeq:XP_002447035.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:55279980..55281480

Molecular Weight (calculated)

17719.7 Da

IEP (calculated)

9.614

GRAVY (calculated)

-0.261

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSQV VEVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGNISLDDI VEIAKTMRPR SMAKEMAGTV KEILGTCVSV GCTVDGKDPK DLQQEIDDGE VEIPSA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.