Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 5
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0040g01870.t01 | Wine grape | cytosol | 96.39 | 96.39 |
| VIT_06s0004g02840.t01 | Wine grape | cytosol | 96.39 | 96.39 |
| GSMUA_Achr4P09610_001 | Banana | cytosol | 79.52 | 96.35 |
| KRH29917 | Soybean | endoplasmic reticulum, nucleus | 95.18 | 95.18 |
| KRH25012 | Soybean | cytosol, endoplasmic reticulum, nucleus | 95.18 | 95.18 |
| Solyc06g075180.1.1 | Tomato | nucleus | 94.58 | 94.58 |
| GSMUA_Achr10P... | Banana | cytosol | 94.58 | 94.58 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 94.58 | 94.58 |
| Solyc11g065670.1.1 | Tomato | cytosol | 94.58 | 94.58 |
| KRH19864 | Soybean | endoplasmic reticulum | 94.58 | 94.58 |
| PGSC0003DMT400083480 | Potato | cytosol | 93.98 | 93.98 |
| PGSC0003DMT400020871 | Potato | cytosol | 93.98 | 93.98 |
| PGSC0003DMT400008687 | Potato | cytosol | 93.98 | 93.98 |
| KRH32476 | Soybean | endoplasmic reticulum | 93.98 | 93.98 |
| GSMUA_Achr8P23840_001 | Banana | cytosol | 93.98 | 93.98 |
| Os02t0699600-01 | Rice | nucleus | 91.57 | 91.57 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 69.88 | 91.34 |
| TraesCS2A01G443200.1 | Wheat | cytosol | 90.96 | 90.96 |
| TraesCS2B01G464300.1 | Wheat | golgi, plastid | 90.96 | 90.96 |
| TraesCS2D01G442300.1 | Wheat | cytosol | 90.96 | 90.96 |
| Zm00001d017719_P001 | Maize | plastid | 90.96 | 90.96 |
| Zm00001d051543_P001 | Maize | plastid | 90.96 | 90.96 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 90.36 | 90.36 |
| Zm00001d002450_P001 | Maize | cytosol | 90.36 | 90.36 |
| Zm00001d003896_P001 | Maize | plastid | 89.76 | 89.76 |
| EES07409 | Sorghum | cytosol | 89.76 | 89.76 |
| EES10673 | Sorghum | cytosol | 89.76 | 89.76 |
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 89.16 | 89.7 |
| AT2G37190.1 | Thale cress | cytosol | 89.16 | 89.16 |
| EES11363 | Sorghum | cytosol | 89.16 | 89.16 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 88.55 | 89.09 |
| AT3G53430.1 | Thale cress | cytosol | 88.55 | 88.55 |
| AT5G60670.1 | Thale cress | cytosol | 87.95 | 87.95 |
| Zm00001d031348_P001 | Maize | cytosol | 84.94 | 84.94 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 90.36 | 78.53 |
| HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 89.16 | 75.9 |
| GSMUA_Achr6P03690_001 | Banana | cytosol | 78.31 | 75.14 |
| GSMUA_Achr7P19710_001 | Banana | cytosol | 78.92 | 69.31 |
| Zm00001d010017_P001 | Maize | cytosol | 71.08 | 52.68 |
| Zm00001d043268_P001 | Maize | cytosol | 57.83 | 47.29 |
Protein Annotations
| Gene3D:1.10.10.250 | EntrezGene:100244384 | wikigene:100244384 | MapMan:17.1.2.1.12 | Gene3D:3.30.1550.10 | UniProt:A5C9G0 |
| EMBL:AM486947 | ProteinID:CAN75443 | ProteinID:CAN75443.1 | ProteinID:CCB56183 | ProteinID:CCB56183.1 | EMBL:FN595998 |
| GO:GO:0000027 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR036769 |
| InterPro:IPR036796 | EntrezGene:LOC100244384 | wikigene:LOC100244384 | HAMAP:MF_00736 | PFAM:PF00298 | PFAM:PF03946 |
| ScanProsite:PS00359 | PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:Ribosomal_L11/L12 | InterPro:Ribosomal_L11/L12_N_sf | InterPro:Ribosomal_L11_C |
| InterPro:Ribosomal_L11_CS | InterPro:Ribosomal_L11_C_sf | InterPro:Ribosomal_L11_N | SMART:SM00649 | SUPFAM:SSF46906 | SUPFAM:SSF54747 |
| TIGR:TC55025 | UniParc:UPI00015226F1 | ArrayExpress:VIT_13s0019g04300 | EnsemblPlantsGene:VIT_13s0019g04300 | EnsemblPlants:VIT_13s0019g04300.t01 | RefSeq:XP_002274407 |
| RefSeq:XP_002274407.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:5613756..5614388
Molecular Weight (calculated)
17824.6 Da
IEP (calculated)
9.180
GRAVY (calculated)
-0.350
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKFDPSQV VDVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKSLKEPE RDRKKTKNIK
101: HNGNISLDDV IEIARVMRPR SMAKDLSGTV KEILGTCVSV GCTVDGKDPK DLQQEIADGD VEVPED
101: HNGNISLDDV IEIARVMRPR SMAKDLSGTV KEILGTCVSV GCTVDGKDPK DLQQEIADGD VEVPED
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
Arabidopsis Description
RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.