Factsheet for Zm00001d003896_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051543_P001	Maize	plastid	98.19	98.19
Zm00001d002450_P001	Maize	cytosol	98.19	98.19
EES10673	Sorghum	cytosol	97.59	97.59
TraesCS6B01G295500.1	Wheat	cytosol	74.1	96.85
Zm00001d017719_P001	Maize	plastid	96.39	96.39
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	95.78	95.78
Os02t0699600-01	Rice	nucleus	95.18	95.18
TraesCS2A01G443200.1	Wheat	cytosol	93.37	93.37
TraesCS2B01G464300.1	Wheat	golgi, plastid	93.37	93.37
TraesCS2D01G442300.1	Wheat	cytosol	93.37	93.37
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	92.77	93.33
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	92.17	92.73
Zm00001d031348_P001	Maize	cytosol	90.96	90.96
Solyc11g069440.1.1	Tomato	nucleus, plastid	90.36	90.36
KRH32476	Soybean	endoplasmic reticulum	90.36	90.36
PGSC0003DMT400008687	Potato	cytosol	90.36	90.36
PGSC0003DMT400020871	Potato	cytosol	90.36	90.36
PGSC0003DMT400083480	Potato	cytosol	90.36	90.36
Solyc06g075180.1.1	Tomato	nucleus	90.36	90.36
Solyc11g065670.1.1	Tomato	cytosol	90.36	90.36
VIT_06s0004g02840.t01	Wine grape	cytosol	89.76	89.76
VIT_08s0040g01870.t01	Wine grape	cytosol	89.76	89.76
VIT_13s0019g04300.t01	Wine grape	cytosol	89.76	89.76
GSMUA_Achr10P...	Banana	cytosol	89.76	89.76
KRH19864	Soybean	endoplasmic reticulum	89.76	89.76
GSMUA_Achr8P23840_001	Banana	cytosol	89.16	89.16
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	88.55	88.55
KRH29917	Soybean	endoplasmic reticulum, nucleus	88.55	88.55
AT2G37190.1	Thale cress	cytosol	88.55	88.55
GSMUA_Achr4P09610_001	Banana	cytosol	72.89	88.32
AT3G53430.1	Thale cress	cytosol	87.95	87.95
CDX76214	Canola	cytosol	87.95	87.95
Bra039787.1-P	Field mustard	cytosol	87.95	87.95
CDY70392	Canola	cytosol	87.95	87.95
Bra039782.1-P	Field mustard	cytosol	87.95	87.95
CDY46760	Canola	cytosol	87.95	87.95
Bra023104.1-P	Field mustard	cytosol	87.95	87.95
CDY30876	Canola	cytosol	87.95	87.95
Bra017204.1-P	Field mustard	cytosol	87.95	87.95
CDY13296	Canola	cytosol	87.35	87.35
CDY56698	Canola	cytosol	87.35	87.35
CDY52760	Canola	cytosol	87.35	87.35
CDX78178	Canola	cytosol, extracellular	86.75	86.75
Bra003134.1-P	Field mustard	cytosol	86.75	86.75
Bra006998.1-P	Field mustard	cytosol	86.14	86.14
AT5G60670.1	Thale cress	cytosol	86.14	86.14
Bra002460.1-P	Field mustard	cytosol	84.94	84.94
CDY31522	Canola	cytosol	84.94	84.94
CDY27019	Canola	cytosol	84.94	84.43
CDY53628	Canola	cytosol	84.34	84.34
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	93.37	81.15
HORVU6Hr1G067870.1	Barley	cytosol, plastid	92.17	78.46
Solyc04g050370.1.1	Tomato	cytosol	30.72	75.0
Solyc04g050360.1.1	Tomato	cytosol	22.29	74.0
GSMUA_Achr6P03690_001	Banana	cytosol	71.08	68.21
GSMUA_Achr7P19710_001	Banana	cytosol	72.29	63.49
CDX91342	Canola	cytosol	19.28	60.38
Solyc04g050410.1.1	Tomato	cytosol	16.87	59.57
Zm00001d010017_P001	Maize	cytosol	77.11	57.14
Zm00001d043268_P001	Maize	cytosol	63.86	52.22
CDX74982	Canola	nucleus	24.1	48.19
Bra005214.1-P	Field mustard	nucleus	24.1	48.19
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	30.12	42.02
Solyc04g050420.1.1	Tomato	cytosol	30.72	39.84
Solyc04g050380.1.1	Tomato	plastid	32.53	38.03
Solyc04g050390.1.1	Tomato	plastid	31.93	36.81
GSMUA_Achr10P...	Banana	cytosol	24.7	33.06
Solyc04g050340.1.1	Tomato	cytosol	14.46	29.27
Solyc04g050430.1.1	Tomato	cytosol	14.46	26.37

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:100282351	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	UniProt:B6T6G1	EMBL:EU960576
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736
ProteinID:ONM17907.1	ProteinID:ONM17908.1	ProteinID:ONM17909.1	ProteinID:ONM17910.1	PFAM:PF00298	PFAM:PF03946
ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C
InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747
UniParc:UPI000182C9A4	EnsemblPlantsGene:Zm00001d003896	EnsemblPlants:Zm00001d003896_P001	EnsemblPlants:Zm00001d003896_T001	:	:

Description

60S ribosomal protein L12

Coordinates

chr2:-:65739234..65741073

Molecular Weight (calculated)

17702.6 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.264

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSQV VEVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGNIGLDDV VEIARTMRNR SMAKELAGTV KEILGTCVSV GCTVDGKDPK DLQQEIDDGE VEIPSA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.