Factsheet for GSMUA_Achr8P23840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	99.4	99.4
GSMUA_Achr4P09610_001	Banana	cytosol	80.12	97.08
VIT_13s0019g04300.t01	Wine grape	cytosol	93.98	93.98
KRH32476	Soybean	endoplasmic reticulum	93.98	93.98
KRH19864	Soybean	endoplasmic reticulum	93.98	93.98
KRH29917	Soybean	endoplasmic reticulum, nucleus	92.77	92.77
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	92.17	92.17
Os02t0699600-01	Rice	nucleus	91.57	91.57
Solyc11g069440.1.1	Tomato	nucleus, plastid	91.57	91.57
Solyc11g065670.1.1	Tomato	cytosol	91.57	91.57
PGSC0003DMT400020871	Potato	cytosol	90.96	90.96
PGSC0003DMT400083480	Potato	cytosol	90.96	90.96
Solyc06g075180.1.1	Tomato	nucleus	90.96	90.96
TraesCS6B01G295500.1	Wheat	cytosol	69.28	90.55
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	90.36	90.36
PGSC0003DMT400008687	Potato	cytosol	90.36	90.36
TraesCS2A01G443200.1	Wheat	cytosol	89.16	89.16
TraesCS2B01G464300.1	Wheat	golgi, plastid	89.16	89.16
TraesCS2D01G442300.1	Wheat	cytosol	89.16	89.16
Zm00001d003896_P001	Maize	plastid	89.16	89.16
Zm00001d051543_P001	Maize	plastid	89.16	89.16
EES10673	Sorghum	cytosol	89.16	89.16
EES07409	Sorghum	cytosol	89.16	89.16
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	88.55	89.09
Zm00001d002450_P001	Maize	cytosol	88.55	88.55
EES11363	Sorghum	cytosol	88.55	88.55
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	87.95	88.48
Zm00001d017719_P001	Maize	plastid	87.95	87.95
AT2G37190.1	Thale cress	cytosol	87.35	87.35
AT5G60670.1	Thale cress	cytosol	87.35	87.35
AT3G53430.1	Thale cress	cytosol	86.75	86.75
Zm00001d031348_P001	Maize	cytosol	83.13	83.13
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	88.55	76.96
GSMUA_Achr6P03690_001	Banana	cytosol	80.12	76.88
HORVU6Hr1G067870.1	Barley	cytosol, plastid	88.55	75.38
GSMUA_Achr7P19710_001	Banana	cytosol	79.52	69.84
Zm00001d010017_P001	Maize	cytosol	69.88	51.79
Zm00001d043268_P001	Maize	cytosol	57.23	46.8
GSMUA_Achr10P...	Banana	cytosol	27.11	36.29

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr8G23840_001	EnsemblPlants:GSMUA_Achr8P23840_001	EnsemblPlants:GSMUA_Achr8T23840_001	InterPro:IPR036769	InterPro:IPR036796	UniProt:M0TT37
HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2
InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N
SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI000294B318	:	:

Description

60S ribosomal protein L12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G23840_001]

Coordinates

chr8:-:28181529..28182029

Molecular Weight (calculated)

17779.6 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.277

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPTQV VDVYVRVTGG EVGAASSLAP KIGPLGLSPK KVGEDIAKET AKEWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV VEIARVMRPR SMAKDLAGTV KEILGTCVSV GCTVDGKDPK DLQTEISDGD VEVPLE

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.