Factsheet for PGSC0003DMT400008687

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075180.1.1	Tomato	nucleus	99.4	99.4
PGSC0003DMT400083480	Potato	cytosol	98.19	98.19
PGSC0003DMT400020871	Potato	cytosol	98.19	98.19
VIT_13s0019g04300.t01	Wine grape	cytosol	93.98	93.98
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	93.37	93.37
KRH29917	Soybean	endoplasmic reticulum, nucleus	92.77	92.77
KRH19864	Soybean	endoplasmic reticulum	92.77	92.77
Zm00001d002450_P001	Maize	cytosol	92.17	92.17
KRH32476	Soybean	endoplasmic reticulum	92.17	92.17
TraesCS6B01G295500.1	Wheat	cytosol	70.48	92.13
Zm00001d051543_P001	Maize	plastid	91.57	91.57
GSMUA_Achr4P09610_001	Banana	cytosol	75.3	91.24
Zm00001d017719_P001	Maize	plastid	90.96	90.96
GSMUA_Achr10P...	Banana	cytosol	90.96	90.96
EES10673	Sorghum	cytosol	90.96	90.96
EES07409	Sorghum	cytosol	90.96	90.96
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	90.36	90.91
Os02t0699600-01	Rice	nucleus	90.36	90.36
TraesCS2D01G442300.1	Wheat	cytosol	90.36	90.36
TraesCS2B01G464300.1	Wheat	golgi, plastid	90.36	90.36
TraesCS2A01G443200.1	Wheat	cytosol	90.36	90.36
EES11363	Sorghum	cytosol	90.36	90.36
Zm00001d003896_P001	Maize	plastid	90.36	90.36
GSMUA_Achr8P23840_001	Banana	cytosol	90.36	90.36
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	89.76	90.3
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	89.76	89.76
AT5G60670.1	Thale cress	cytosol	86.75	86.75
Zm00001d031348_P001	Maize	cytosol	86.75	86.75
AT2G37190.1	Thale cress	cytosol	86.14	86.14
AT3G53430.1	Thale cress	cytosol	85.54	85.54
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	90.36	78.53
HORVU6Hr1G067870.1	Barley	cytosol, plastid	90.36	76.92
GSMUA_Achr6P03690_001	Banana	cytosol	74.1	71.1
GSMUA_Achr7P19710_001	Banana	cytosol	75.3	66.14
CDX91342	Canola	cytosol	18.67	58.49
Zm00001d010017_P001	Maize	cytosol	72.29	53.57
Zm00001d043268_P001	Maize	cytosol	59.64	48.77
Bra005214.1-P	Field mustard	nucleus	22.89	45.78
CDX74982	Canola	nucleus	22.89	45.78

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:102600463	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	ProteinID:AFX66983	ProteinID:AFX66983.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	EMBL:JX683419
UniProt:K7WTX4	HAMAP:MF_00736	RefSeq:NP_001275600.1	PFAM:PF00298	PFAM:PF03946	EnsemblPlantsGene:PGSC0003DMG400003368
PGSC:PGSC0003DMG400003368	EnsemblPlants:PGSC0003DMT400008687	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649
SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI0002958519	:	:	:

Description

60S ribosomal protein L12 [Source:PGSC_GENE;Acc:PGSC0003DMG400003368]

Coordinates

chr6:+:55837541..55838284

Molecular Weight (calculated)

17799.6 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.324

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPSQV VEVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET SKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV IEIAKVMQSR SMAKDLSGTV KEILGTCVSV GCTVDGKDPK DLQQEITDGD VEIPQD

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.