Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 84.62 | 100.0 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 84.1 | 99.39 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 64.62 | 99.21 |
| EES10673 | Sorghum | cytosol | 80.0 | 93.98 |
| EES07409 | Sorghum | cytosol | 80.0 | 93.98 |
| Zm00001d002450_P001 | Maize | cytosol | 80.0 | 93.98 |
| EES11363 | Sorghum | cytosol | 79.49 | 93.37 |
| Zm00001d051543_P001 | Maize | plastid | 79.49 | 93.37 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 78.97 | 92.77 |
| Zm00001d017719_P001 | Maize | plastid | 78.97 | 92.77 |
| Os02t0699600-01 | Rice | nucleus | 78.46 | 92.17 |
| Zm00001d003896_P001 | Maize | plastid | 78.46 | 92.17 |
| VIT_08s0040g01870.t01 | Wine grape | cytosol | 77.44 | 90.96 |
| VIT_06s0004g02840.t01 | Wine grape | cytosol | 77.44 | 90.96 |
| PGSC0003DMT400008687 | Potato | cytosol | 76.92 | 90.36 |
| PGSC0003DMT400020871 | Potato | cytosol | 76.92 | 90.36 |
| PGSC0003DMT400083480 | Potato | cytosol | 76.92 | 90.36 |
| Solyc06g075180.1.1 | Tomato | nucleus | 76.92 | 90.36 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 76.92 | 90.36 |
| Solyc11g065670.1.1 | Tomato | cytosol | 76.92 | 90.36 |
| CDX76214 | Canola | cytosol | 75.9 | 89.16 |
| AT2G37190.1 | Thale cress | cytosol | 75.9 | 89.16 |
| AT5G60670.1 | Thale cress | cytosol | 75.9 | 89.16 |
| CDY70392 | Canola | cytosol | 75.9 | 89.16 |
| Bra017204.1-P | Field mustard | cytosol | 75.9 | 89.16 |
| CDY46760 | Canola | cytosol | 75.9 | 89.16 |
| Bra023104.1-P | Field mustard | cytosol | 75.9 | 89.16 |
| CDY30876 | Canola | cytosol | 75.9 | 89.16 |
| Bra039782.1-P | Field mustard | cytosol | 75.9 | 89.16 |
| VIT_13s0019g04300.t01 | Wine grape | cytosol | 75.9 | 89.16 |
| Bra039787.1-P | Field mustard | cytosol | 75.9 | 89.16 |
| Zm00001d031348_P001 | Maize | cytosol | 75.38 | 88.55 |
| AT3G53430.1 | Thale cress | cytosol | 75.38 | 88.55 |
| GSMUA_Achr8P23840_001 | Banana | cytosol | 75.38 | 88.55 |
| CDY13296 | Canola | cytosol | 75.38 | 88.55 |
| CDY52760 | Canola | cytosol | 75.38 | 88.55 |
| CDY56698 | Canola | cytosol | 75.38 | 88.55 |
| Bra002460.1-P | Field mustard | cytosol | 74.87 | 87.95 |
| KRH25012 | Soybean | cytosol, endoplasmic reticulum, nucleus | 74.87 | 87.95 |
| KRH29917 | Soybean | endoplasmic reticulum, nucleus | 74.87 | 87.95 |
| Bra003134.1-P | Field mustard | cytosol | 74.87 | 87.95 |
| CDX78178 | Canola | cytosol, extracellular | 74.87 | 87.95 |
| CDY31522 | Canola | cytosol | 74.87 | 87.95 |
| GSMUA_Achr10P... | Banana | cytosol | 74.87 | 87.95 |
| KRH19864 | Soybean | endoplasmic reticulum | 74.36 | 87.35 |
| Bra006998.1-P | Field mustard | cytosol | 74.36 | 87.35 |
| CDY53628 | Canola | cytosol | 74.36 | 87.35 |
| KRH32476 | Soybean | endoplasmic reticulum | 73.85 | 86.75 |
| GSMUA_Achr4P09610_001 | Banana | cytosol | 60.51 | 86.13 |
| CDY27019 | Canola | cytosol | 73.33 | 85.63 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 83.59 | 85.34 |
| Solyc04g050370.1.1 | Tomato | cytosol | 27.18 | 77.94 |
| Solyc04g050360.1.1 | Tomato | cytosol | 18.46 | 72.0 |
| GSMUA_Achr6P03690_001 | Banana | cytosol | 60.0 | 67.63 |
| CDX91342 | Canola | cytosol | 17.44 | 64.15 |
| GSMUA_Achr7P19710_001 | Banana | cytosol | 61.03 | 62.96 |
| Solyc04g050410.1.1 | Tomato | cytosol | 13.85 | 57.45 |
| Zm00001d010017_P001 | Maize | cytosol | 63.08 | 54.91 |
| Bra005214.1-P | Field mustard | nucleus | 21.54 | 50.6 |
| CDX74982 | Canola | nucleus | 21.54 | 50.6 |
| Zm00001d043268_P001 | Maize | cytosol | 51.79 | 49.75 |
| Solyc04g050400.1.1 | Tomato | endoplasmic reticulum, vacuole | 27.18 | 44.54 |
| Solyc04g050420.1.1 | Tomato | cytosol | 27.69 | 42.19 |
| Solyc04g050380.1.1 | Tomato | plastid | 28.72 | 39.44 |
| Solyc04g050390.1.1 | Tomato | plastid | 28.21 | 38.19 |
| Solyc04g050340.1.1 | Tomato | cytosol | 13.85 | 32.93 |
| GSMUA_Achr10P... | Banana | cytosol | 20.0 | 31.45 |
| Solyc04g050430.1.1 | Tomato | cytosol | 13.85 | 29.67 |
Protein Annotations
| Gene3D:1.10.10.250 | MapMan:17.1.2.1.12 | Gene3D:3.30.1550.10 | UniProt:A0A287UIJ6 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU6Hr1G067870 | EnsemblPlants:HORVU6Hr1G067870.1 | InterPro:IPR036769 | InterPro:IPR036796 | HAMAP:MF_00736 | PFAM:PF00298 |
| PFAM:PF03946 | ScanProsite:PS00359 | PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:Ribosomal_L11/L12 | InterPro:Ribosomal_L11/L12_N_sf |
| InterPro:Ribosomal_L11_C | InterPro:Ribosomal_L11_CS | InterPro:Ribosomal_L11_C_sf | InterPro:Ribosomal_L11_N | SMART:SM00649 | SUPFAM:SSF46906 |
| SUPFAM:SSF54747 | UniParc:UPI000B46B446 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:471244933..471246184
Molecular Weight (calculated)
20691.3 Da
IEP (calculated)
10.066
GRAVY (calculated)
-0.283
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: QHKRAAQTLA SPTPAAATQT AHPPQPKLAA MPPKLDPSQI VEVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA
101: KVSVVPSAAA LVIKALKEPE RDRKKVKNIK HNGNISLDDV IEIAKIMKVR SMAKEMAGTV KEILGTCVSV GCTVDGKDPK DLQTEIDDGE VEIPA
101: KVSVVPSAAA LVIKALKEPE RDRKKVKNIK HNGNISLDDV IEIAKIMKVR SMAKEMAGTV KEILGTCVSV GCTVDGKDPK DLQTEIDDGE VEIPA
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
Arabidopsis Description
RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.