Factsheet for Solyc04g050420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
peroxisome 1
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	peroxisome, plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050370.1.1	Tomato	cytosol	39.06	73.53
Solyc04g050360.1.1	Tomato	cytosol	21.09	54.0
Solyc04g050410.1.1	Tomato	cytosol	19.53	53.19
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	33.59	36.13
VIT_08s0040g01870.t01	Wine grape	cytosol	46.09	35.54
Solyc06g075180.1.1	Tomato	nucleus	46.09	35.54
VIT_06s0004g02840.t01	Wine grape	cytosol	45.31	34.94
Solyc11g069440.1.1	Tomato	nucleus, plastid	44.53	34.34
Solyc11g065670.1.1	Tomato	cytosol	44.53	34.34
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	42.19	32.73
Solyc04g050390.1.1	Tomato	plastid	36.72	32.64
Zm00001d002450_P001	Maize	cytosol	42.19	32.53
Solyc04g050380.1.1	Tomato	plastid	35.94	32.39
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	41.41	32.12
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	41.41	31.93
Os02t0699600-01	Rice	nucleus	41.41	31.93
Zm00001d017719_P001	Maize	plastid	41.41	31.93
Zm00001d031348_P001	Maize	cytosol	41.41	31.93
Zm00001d051543_P001	Maize	plastid	41.41	31.93
EES10673	Sorghum	cytosol	41.41	31.93
TraesCS2A01G443200.1	Wheat	cytosol	41.41	31.93
TraesCS2B01G464300.1	Wheat	golgi, plastid	41.41	31.93
TraesCS2D01G442300.1	Wheat	cytosol	41.41	31.93
EES07409	Sorghum	cytosol	41.41	31.93
AT5G60670.1	Thale cress	cytosol	41.41	31.93
EES11363	Sorghum	cytosol	40.62	31.33
AT2G37190.1	Thale cress	cytosol	40.62	31.33
Zm00001d003896_P001	Maize	plastid	39.84	30.72
AT3G53430.1	Thale cress	cytosol	39.84	30.72
TraesCS6B01G295500.1	Wheat	cytosol	30.47	30.71
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	41.41	27.75
HORVU6Hr1G067870.1	Barley	cytosol, plastid	42.19	27.69
Zm00001d043268_P001	Maize	cytosol	38.28	24.14
GSMUA_Achr10P...	Banana	cytosol	22.66	23.39
Zm00001d010017_P001	Maize	cytosol	39.84	22.77
Solyc04g050430.1.1	Tomato	cytosol	15.62	21.98
Solyc04g050340.1.1	Tomato	cytosol	14.06	21.95

Protein Annotations

Gene3D:1.10.10.250	MapMan:35.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625
InterPro:IPR036769	UniProt:K4BS14	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11_C_sf	SUPFAM:SSF46906	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc04g050420.1	EnsemblPlants:Solyc04g050420.1.1	UniParc:UPI0002766BEF

Description

No Description!

Coordinates

chr4:-:47022119..47022603

Molecular Weight (calculated)

14126.1 Da

IEP (calculated)

4.925

GRAVY (calculated)

0.016

Length

128 amino acids

Sequence
(BLAST)

001: MSVMERSHRG KEFLSIIQKA ESDLTTLLII SDEYAVLFLQ GCAFLSNVSV VVPSTAAIVI KALKEPERDR KKTNNIKHNG YISPHVVIEI AKMVILETSV
101: SIGCTVDGKD TKDLQQDIID GDVEIPQD

Best Arabidopsis Sequence Match ( AT4G35630.1 )
(BLAST)

001: MAATTNSFLV GSNNTQIPAL KPKSSSQSFL HLSKPNTVNF VSKTKPVAVR CVASTTQVQD GVRSGSVGSQ ERVFNFAAGP ATLPENVLLK AQADLYNWRG
101: SGMSVMEMSH RGKEFLSIIQ KAESDLRQLL EIPQEYSVLF LQGGATTQFA ALPLNLCKSD DTVDFVVTGS WGDKAVKEAK KYCKTNVIWS GKSEKYTKVP
201: SFEELEQTPD AKYLHICANE TIHGVEFKDY PVPKNGFLVA DMSSNFCSKP VDVSKFGVIY GGAQKNVGPS GVTIVIIRKD LIGNAQDITP VMLDYKIHDE
301: NSSLYNTPPC FGIYMCGLVF EDLLEQGGLK EVEKKNQRKA DLLYNAIEES NGFFRCPVEK SVRSLMNVPF TLEKSELEAE FIKEAAKEKM VQLKGHRSVG
401: GMRASIYNAM PLAGVEKLVA FMKDFQAKHA

Arabidopsis Description

PSAT1Phosphoserine aminotransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96255]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.