Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 4
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g050360.1.1 | Tomato | cytosol | 53.19 | 50.0 |
| Solyc04g050370.1.1 | Tomato | cytosol | 70.21 | 48.53 |
| Solyc04g050390.1.1 | Tomato | plastid | 65.96 | 21.53 |
| Solyc04g050400.1.1 | Tomato | endoplasmic reticulum, vacuole | 53.19 | 21.01 |
| Solyc04g050380.1.1 | Tomato | plastid | 59.57 | 19.72 |
| Solyc04g050420.1.1 | Tomato | cytosol | 53.19 | 19.53 |
| Solyc06g075180.1.1 | Tomato | nucleus | 65.96 | 18.67 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 61.7 | 17.47 |
| Solyc11g065670.1.1 | Tomato | cytosol | 61.7 | 17.47 |
| Zm00001d051543_P001 | Maize | plastid | 59.57 | 16.87 |
| Zm00001d017719_P001 | Maize | plastid | 59.57 | 16.87 |
| Zm00001d003896_P001 | Maize | plastid | 59.57 | 16.87 |
| Zm00001d002450_P001 | Maize | cytosol | 59.57 | 16.87 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 59.57 | 16.87 |
| Os02t0699600-01 | Rice | nucleus | 59.57 | 16.87 |
| AT3G53430.1 | Thale cress | cytosol | 59.57 | 16.87 |
| AT5G60670.1 | Thale cress | cytosol | 59.57 | 16.87 |
| EES11363 | Sorghum | cytosol | 59.57 | 16.87 |
| EES10673 | Sorghum | cytosol | 59.57 | 16.87 |
| EES07409 | Sorghum | cytosol | 59.57 | 16.87 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 57.45 | 16.36 |
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 57.45 | 16.36 |
| Zm00001d031348_P001 | Maize | cytosol | 57.45 | 16.27 |
| TraesCS2D01G442300.1 | Wheat | cytosol | 57.45 | 16.27 |
| TraesCS2A01G443200.1 | Wheat | cytosol | 57.45 | 16.27 |
| TraesCS2B01G464300.1 | Wheat | golgi, plastid | 57.45 | 16.27 |
| AT2G37190.1 | Thale cress | cytosol | 55.32 | 15.66 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 57.45 | 14.14 |
| HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 57.45 | 13.85 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 36.17 | 13.39 |
| Zm00001d043268_P001 | Maize | cytosol | 57.45 | 13.3 |
| Zm00001d010017_P001 | Maize | cytosol | 57.45 | 12.05 |
| GSMUA_Achr10P... | Banana | cytosol | 8.51 | 3.23 |
| Solyc04g050340.1.1 | Tomato | cytosol | 4.26 | 2.44 |
| Solyc04g050430.1.1 | Tomato | cytosol | 2.13 | 1.1 |
| CDX74982 | Canola | nucleus | 0.0 | 0.0 |
| CDX91342 | Canola | cytosol | 0.0 | 0.0 |
| Bra005214.1-P | Field mustard | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.250 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036769 | UniProt:K4BS13 |
| PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:Ribosomal_L11/L12 | InterPro:Ribosomal_L11_C_sf | EnsemblPlantsGene:Solyc04g050410.1 | EnsemblPlants:Solyc04g050410.1.1 |
| UniParc:UPI0002766BEE | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:47014194..47014544
Molecular Weight (calculated)
5182.2 Da
IEP (calculated)
3.776
GRAVY (calculated)
-0.251
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MSMAKDLSET VKEILGICVF VGCTVEGKDP KDLQQEIIEG DEEIPQD
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN
Arabidopsis Description
RPL12B60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.