Factsheet for Solyc04g050340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050430.1.1	Tomato	cytosol	41.46	37.36
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	46.34	31.93
Solyc04g050390.1.1	Tomato	plastid	50.0	28.47
Solyc04g050380.1.1	Tomato	plastid	47.56	27.46
Solyc04g050370.1.1	Tomato	cytosol	19.51	23.53
Solyc04g050360.1.1	Tomato	cytosol	13.41	22.0
Solyc06g075180.1.1	Tomato	nucleus	40.24	19.88
Solyc11g065670.1.1	Tomato	cytosol	40.24	19.88
Solyc11g069440.1.1	Tomato	nucleus, plastid	40.24	19.88
VIT_08s0040g01870.t01	Wine grape	cytosol	36.59	18.07
VIT_06s0004g02840.t01	Wine grape	cytosol	36.59	18.07
TraesCS2A01G443200.1	Wheat	cytosol	34.15	16.87
TraesCS2B01G464300.1	Wheat	golgi, plastid	34.15	16.87
TraesCS2D01G442300.1	Wheat	cytosol	34.15	16.87
AT5G60670.1	Thale cress	cytosol	34.15	16.87
Zm00001d031348_P001	Maize	cytosol	34.15	16.87
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	32.93	16.36
AT3G53430.1	Thale cress	cytosol	32.93	16.27
Zm00001d002450_P001	Maize	cytosol	32.93	16.27
Os02t0699600-01	Rice	nucleus	32.93	16.27
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	31.71	15.76
Zm00001d051543_P001	Maize	plastid	31.71	15.66
AT2G37190.1	Thale cress	cytosol	31.71	15.66
Zm00001d017719_P001	Maize	plastid	31.71	15.66
EES07409	Sorghum	cytosol	31.71	15.66
EES10673	Sorghum	cytosol	31.71	15.66
GSMUA_Achr10P...	Banana	cytosol	23.17	15.32
EES11363	Sorghum	cytosol	30.49	15.06
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	30.49	15.06
Zm00001d003896_P001	Maize	plastid	29.27	14.46
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	32.93	14.14
Solyc04g050420.1.1	Tomato	cytosol	21.95	14.06
HORVU6Hr1G067870.1	Barley	cytosol, plastid	32.93	13.85
Zm00001d043268_P001	Maize	cytosol	31.71	12.81
Zm00001d010017_P001	Maize	cytosol	32.93	12.05
TraesCS6B01G295500.1	Wheat	cytosol	9.76	6.3
Solyc04g050410.1.1	Tomato	cytosol	2.44	4.26

Protein Annotations

Gene3D:1.10.10.250	MapMan:35.2	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625
InterPro:IPR036769	UniProt:K4BS06	PFAM:PF00298	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_C_sf	SUPFAM:SSF46906	EnsemblPlantsGene:Solyc04g050340.1	EnsemblPlants:Solyc04g050340.1.1	UniParc:UPI0002766BE7

Description

No Description!

Coordinates

chr4:-:46810303..46810765

Molecular Weight (calculated)

9318.6 Da

IEP (calculated)

10.884

GRAVY (calculated)

-0.218

Length

82 amino acids

Sequence
(BLAST)

1: MSSIKAKMTS LTDGVPACLF WKRALKGTEQ DKKKAKNINH NGKISLDVVI EIAKVIQPRS MAKDLSITVR RSWELMYPFV VR

Best Arabidopsis Sequence Match ( AT5G60670.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE

Arabidopsis Description

RPL12C60S ribosomal protein L12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.