Factsheet for GSMUA_Achr10P23300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050370.1.1	Tomato	cytosol	17.74	32.35
GSMUA_Achr4P09610_001	Banana	cytosol	31.45	28.47
GSMUA_Achr10P...	Banana	cytosol	36.29	27.11
GSMUA_Achr8P23840_001	Banana	cytosol	36.29	27.11
Os02t0699600-01	Rice	nucleus	34.68	25.9
Zm00001d017719_P001	Maize	plastid	33.87	25.3
VIT_08s0040g01870.t01	Wine grape	cytosol	33.87	25.3
EES07409	Sorghum	cytosol	33.87	25.3
EES10673	Sorghum	cytosol	33.87	25.3
VIT_06s0004g02840.t01	Wine grape	cytosol	33.87	25.3
Zm00001d051543_P001	Maize	plastid	33.06	24.7
Zm00001d003896_P001	Maize	plastid	33.06	24.7
EES11363	Sorghum	cytosol	33.06	24.7
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	33.06	24.7
AT3G53430.1	Thale cress	cytosol	32.26	24.1
Zm00001d002450_P001	Maize	cytosol	32.26	24.1
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	31.45	23.64
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	31.45	23.64
TraesCS2D01G442300.1	Wheat	cytosol	31.45	23.49
AT2G37190.1	Thale cress	cytosol	31.45	23.49
AT5G60670.1	Thale cress	cytosol	31.45	23.49
TraesCS2B01G464300.1	Wheat	golgi, plastid	31.45	23.49
TraesCS2A01G443200.1	Wheat	cytosol	31.45	23.49
Solyc04g050340.1.1	Tomato	cytosol	15.32	23.17
Zm00001d031348_P001	Maize	cytosol	30.65	22.89
Solyc04g050420.1.1	Tomato	cytosol	23.39	22.66
GSMUA_Achr6P03690_001	Banana	cytosol	31.45	22.54
Solyc04g050430.1.1	Tomato	cytosol	16.13	21.98
TraesCS6B01G295500.1	Wheat	cytosol	21.77	21.26
GSMUA_Achr7P19710_001	Banana	cytosol	30.65	20.11
HORVU6Hr1G067870.1	Barley	cytosol, plastid	31.45	20.0
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	30.65	19.9
CDX91342	Canola	cytosol	8.06	18.87
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	16.94	17.65
Solyc04g050390.1.1	Tomato	plastid	20.16	17.36
Zm00001d043268_P001	Maize	cytosol	27.42	16.75
Zm00001d010017_P001	Maize	cytosol	29.84	16.52
Solyc04g050380.1.1	Tomato	plastid	18.55	16.2
CDX74982	Canola	nucleus	8.87	13.25
Bra005214.1-P	Field mustard	nucleus	8.87	13.25
Solyc04g050410.1.1	Tomato	cytosol	3.23	8.51
Solyc04g050360.1.1	Tomato	cytosol	3.23	8.0

Protein Annotations

Gene3D:1.10.10.250	MapMan:35.2	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G23300_001	EnsemblPlants:GSMUA_Achr10P23300_001
EnsemblPlants:GSMUA_Achr10T23300_001	InterPro:IPR036769	UniProt:M0RKQ5	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11_C_sf	UniParc:UPI0002951E6B	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G23300_001]

Coordinates

chr10:-:28118358..28118829

Molecular Weight (calculated)

13585.4 Da

IEP (calculated)

10.233

GRAVY (calculated)

-0.523

Length

124 amino acids

Sequence
(BLAST)

001: MPSQYGPIQL TYSAQNNQPG SHIYNPLANP LFGNPESWLL RRRSYSSLPL PSPPSPCGEV GAASSLAPKI GLLGLSPKKG ALKEPQRDRK KTKNIKRDGS
101: ISLDDVVEIA RVMRPRLDLH DLVC

Best Arabidopsis Sequence Match ( AT3G53430.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN

Arabidopsis Description

RPL12B60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.