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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 5
  • nucleus 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_06s0004g02840.t01 Wine grape cytosol 99.4 99.4
VIT_13s0019g04300.t01 Wine grape cytosol 96.39 96.39
TraesCS6B01G295500.1 Wheat cytosol 71.08 92.91
TraesCS2A01G443200.1 Wheat cytosol 91.57 91.57
TraesCS2B01G464300.1 Wheat golgi, plastid 91.57 91.57
TraesCS2D01G442300.1 Wheat cytosol 91.57 91.57
Zm00001d017719_P001 Maize plastid 91.57 91.57
Zm00001d002450_P001 Maize cytosol 91.57 91.57
TraesCS6A01G268300.1 Wheat cytosol, nucleus 90.96 91.52
Os04t0598200-00 Rice cytosol, extracellular, nucleus, plastid 90.96 90.96
Os02t0699600-01 Rice nucleus 90.96 90.96
Zm00001d051543_P001 Maize plastid 90.96 90.96
EES10673 Sorghum cytosol 90.96 90.96
EES07409 Sorghum cytosol 90.96 90.96
TraesCS6D01G246600.1 Wheat cytosol, golgi, nucleus, unclear 90.36 90.91
EES11363 Sorghum cytosol 90.36 90.36
Zm00001d003896_P001 Maize plastid 89.76 89.76
AT5G60670.1 Thale cress cytosol 89.76 89.76
AT2G37190.1 Thale cress cytosol 89.16 89.16
AT3G53430.1 Thale cress cytosol 88.55 88.55
Zm00001d031348_P001 Maize cytosol 86.14 86.14
Solyc04g050370.1.1 Tomato cytosol 34.94 85.29
Solyc04g050360.1.1 Tomato cytosol 25.3 84.0
HORVU2Hr1G102610.1 Barley cytosol, mitochondrion 90.96 79.06
HORVU6Hr1G067870.1 Barley cytosol, plastid 90.96 77.44
Zm00001d010017_P001 Maize cytosol 71.69 53.12
Solyc04g050400.1.1 Tomato endoplasmic reticulum, vacuole 35.54 49.58
Zm00001d043268_P001 Maize cytosol 58.43 47.78
Solyc04g050420.1.1 Tomato cytosol 35.54 46.09
Solyc04g050390.1.1 Tomato plastid 38.55 44.44
Solyc04g050380.1.1 Tomato plastid 37.35 43.66
Solyc04g050340.1.1 Tomato cytosol 18.07 36.59
GSMUA_Achr10P... Banana cytosol 25.3 33.87
Solyc04g050430.1.1 Tomato cytosol 18.07 32.97
Protein Annotations
Gene3D:1.10.10.250EntrezGene:100267052wikigene:100267052MapMan:17.1.2.1.12Gene3D:3.30.1550.10UniProt:A5C1K6
EMBL:AM478873ProteinID:CAN66258ProteinID:CAN66258.1ProteinID:CCB57072ProteinID:CCB57072.1EMBL:FN596008
GO:GO:0000027GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016043GO:GO:0019538GO:GO:0019843GO:GO:0022625GO:GO:0030529InterPro:IPR036769
InterPro:IPR036796EntrezGene:LOC100267052wikigene:LOC100267052HAMAP:MF_00736PFAM:PF00298PFAM:PF03946
ScanProsite:PS00359PANTHER:PTHR11661PANTHER:PTHR11661:SF2InterPro:Ribosomal_L11/L12InterPro:Ribosomal_L11/L12_N_sfInterPro:Ribosomal_L11_C
InterPro:Ribosomal_L11_CSInterPro:Ribosomal_L11_C_sfInterPro:Ribosomal_L11_NSMART:SM00649SUPFAM:SSF46906SUPFAM:SSF54747
TIGR:TC52607UniParc:UPI0001522324ArrayExpress:VIT_08s0040g01870EnsemblPlantsGene:VIT_08s0040g01870EnsemblPlants:VIT_08s0040g01870.t01RefSeq:XP_002281255
RefSeq:XP_002281255.1:::::
Description
No Description!
Coordinates
chr8:+:12972382..12973115
Molecular Weight (calculated)
17793.6 Da
IEP (calculated)
9.542
GRAVY (calculated)
-0.328
Length
166 amino acids
Sequence
(BLAST)
001: MPPKFDPSQV VDVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV IEIAKIMRPR SMAKDLSGSV KEILGTCVSV GCTVDGKDPK DLQQEIADGD VEIPQD
Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
Arabidopsis Description
RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.