Factsheet for Os02t0699600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
cytosol: 19685898
nucleus: 23777608
extracellular: 24083427
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	98.8	98.8
Zm00001d051543_P001	Maize	plastid	96.39	96.39
Zm00001d017719_P001	Maize	plastid	96.39	96.39
EES10673	Sorghum	cytosol	96.39	96.39
EES07409	Sorghum	cytosol	96.39	96.39
EES11363	Sorghum	cytosol	95.78	95.78
Zm00001d002450_P001	Maize	cytosol	95.78	95.78
Zm00001d003896_P001	Maize	plastid	95.18	95.18
TraesCS6B01G295500.1	Wheat	cytosol	72.29	94.49
TraesCS2D01G442300.1	Wheat	cytosol	93.98	93.98
TraesCS2B01G464300.1	Wheat	golgi, plastid	93.98	93.98
TraesCS2A01G443200.1	Wheat	cytosol	93.98	93.98
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	92.77	93.33
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	92.17	92.73
GSMUA_Achr10P...	Banana	cytosol	92.17	92.17
Solyc11g069440.1.1	Tomato	nucleus, plastid	91.57	91.57
Solyc11g065670.1.1	Tomato	cytosol	91.57	91.57
VIT_13s0019g04300.t01	Wine grape	cytosol	91.57	91.57
KRH32476	Soybean	endoplasmic reticulum	91.57	91.57
GSMUA_Achr8P23840_001	Banana	cytosol	91.57	91.57
Solyc06g075180.1.1	Tomato	nucleus	90.96	90.96
KRH19864	Soybean	endoplasmic reticulum	90.96	90.96
KRH29917	Soybean	endoplasmic reticulum, nucleus	90.96	90.96
PGSC0003DMT400020871	Potato	cytosol	90.96	90.96
PGSC0003DMT400083480	Potato	cytosol	90.96	90.96
VIT_08s0040g01870.t01	Wine grape	cytosol	90.96	90.96
VIT_06s0004g02840.t01	Wine grape	cytosol	90.96	90.96
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	90.36	90.36
PGSC0003DMT400008687	Potato	cytosol	90.36	90.36
GSMUA_Achr4P09610_001	Banana	cytosol	74.1	89.78
Zm00001d031348_P001	Maize	cytosol	89.16	89.16
Bra039782.1-P	Field mustard	cytosol	89.16	89.16
Bra039787.1-P	Field mustard	cytosol	89.16	89.16
Bra023104.1-P	Field mustard	cytosol	89.16	89.16
CDX76214	Canola	cytosol	89.16	89.16
Bra017204.1-P	Field mustard	cytosol	89.16	89.16
CDY70392	Canola	cytosol	89.16	89.16
CDY30876	Canola	cytosol	89.16	89.16
CDY46760	Canola	cytosol	89.16	89.16
AT2G37190.1	Thale cress	cytosol	89.16	89.16
CDY52760	Canola	cytosol	88.55	88.55
AT3G53430.1	Thale cress	cytosol	88.55	88.55
CDY56698	Canola	cytosol	88.55	88.55
CDY13296	Canola	cytosol	88.55	88.55
Bra006998.1-P	Field mustard	cytosol	88.55	88.55
CDX78178	Canola	cytosol, extracellular	87.95	87.95
Bra003134.1-P	Field mustard	cytosol	87.95	87.95
AT5G60670.1	Thale cress	cytosol	87.35	87.35
CDY31522	Canola	cytosol	86.14	86.14
Bra002460.1-P	Field mustard	cytosol	86.14	86.14
CDY27019	Canola	cytosol	86.14	85.63
CDY53628	Canola	cytosol	85.54	85.54
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	93.37	81.15
HORVU6Hr1G067870.1	Barley	cytosol, plastid	92.17	78.46
Solyc04g050370.1.1	Tomato	cytosol	31.93	77.94
Solyc04g050360.1.1	Tomato	cytosol	22.89	76.0
GSMUA_Achr6P03690_001	Banana	cytosol	73.49	70.52
GSMUA_Achr7P19710_001	Banana	cytosol	74.7	65.61
CDX91342	Canola	cytosol	19.28	60.38
Solyc04g050410.1.1	Tomato	cytosol	16.87	59.57
Zm00001d010017_P001	Maize	cytosol	75.3	55.8
Zm00001d043268_P001	Maize	cytosol	62.05	50.74
CDX74982	Canola	nucleus	22.89	45.78
Bra005214.1-P	Field mustard	nucleus	22.89	45.78
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	32.53	45.38
Solyc04g050420.1.1	Tomato	cytosol	31.93	41.41
Solyc04g050380.1.1	Tomato	plastid	34.34	40.14
Solyc04g050390.1.1	Tomato	plastid	34.34	39.58
GSMUA_Achr10P...	Banana	cytosol	25.9	34.68
Solyc04g050340.1.1	Tomato	cytosol	16.27	32.93
Solyc04g050430.1.1	Tomato	cytosol	16.27	29.67

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	EntrezGene:4330425	EMBL:AK121709	ProteinID:BAD07879.1
ProteinID:BAF09746.1	ProteinID:BAS80449.1	ProteinID:EAZ24290.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	EnsemblPlantsGene:Os02g0699600	EnsemblPlants:Os02t0699600-01
PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	UniProt:Q6Z8E0
InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N
SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI00001A53DE	RefSeq:XP_015627232.1	:

Description

Similar to 60S ribosomal protein L12. (Os02t0699600-01)

Coordinates

chr2:+:28772935..28774108

Molecular Weight (calculated)

17717.7 Da

IEP (calculated)

9.896

GRAVY (calculated)

-0.219

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPTQV VDVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGNISLDDV IEIARVMRPR SMAKEMAGTV KEILGTCVSV GCTVDGKDPK DLQQEISDGE VEIPSA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.