CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006998.1-P	Field mustard	cytosol	99.4	99.4
CDY13296	Canola	cytosol	99.4	99.4
CDY56698	Canola	cytosol	99.4	99.4
CDY52760	Canola	cytosol	99.4	99.4
CDX76214	Canola	cytosol	98.8	98.8
CDY30876	Canola	cytosol	98.8	98.8
CDY46760	Canola	cytosol	97.59	97.59
CDY70392	Canola	cytosol	97.59	97.59
CDY53628	Canola	cytosol	93.98	93.98
CDY31522	Canola	cytosol	93.37	93.37
CDY27019	Canola	cytosol	92.77	92.22
TraesCS6B01G295500.1	Wheat	cytosol	69.28	90.55
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	87.95	88.48
Zm00001d051543_P001	Maize	plastid	87.95	87.95
Os02t0699600-01	Rice	nucleus	87.95	87.95
Zm00001d017719_P001	Maize	plastid	87.95	87.95
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	87.95	87.95
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	87.35	87.88
Zm00001d002450_P001	Maize	cytosol	87.35	87.35
TraesCS2A01G443200.1	Wheat	cytosol	87.35	87.35
TraesCS2B01G464300.1	Wheat	golgi, plastid	87.35	87.35
TraesCS2D01G442300.1	Wheat	cytosol	87.35	87.35
Zm00001d003896_P001	Maize	plastid	86.75	86.75
EES10673	Sorghum	cytosol	86.75	86.75
EES07409	Sorghum	cytosol	86.75	86.75
EES11363	Sorghum	cytosol	86.14	86.14
Zm00001d031348_P001	Maize	cytosol	81.93	81.93
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	86.75	75.39
HORVU6Hr1G067870.1	Barley	cytosol, plastid	87.95	74.87
CDX91342	Canola	cytosol	20.48	64.15
Zm00001d010017_P001	Maize	cytosol	69.88	51.79
CDX74982	Canola	nucleus	24.1	48.19
Zm00001d043268_P001	Maize	cytosol	57.83	47.29

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:A0A078CSQ1	EnsemblPlants:CDX78178	ProteinID:CDX78178
ProteinID:CDX78178.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00129484001	InterPro:IPR036769	InterPro:IPR036796
HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2
InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N
SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI0001BA918C	:	:

Description

BnaA09g33730D

Coordinates

chrLK031814:-:1548801..1549544

Molecular Weight (calculated)

17911.9 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.269

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSAI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IDIPEN

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.