Factsheet for Zm00001d043268_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010017_P001	Maize	cytosol	96.55	87.5
Solyc04g050370.1.1	Tomato	cytosol	25.12	75.0
Solyc04g050360.1.1	Tomato	cytosol	16.75	68.0
Zm00001d051543_P001	Maize	plastid	53.69	65.66
Zm00001d002450_P001	Maize	cytosol	53.69	65.66
Zm00001d003896_P001	Maize	plastid	52.22	63.86
EES11363	Sorghum	cytosol	52.22	63.86
Zm00001d017719_P001	Maize	plastid	51.72	63.25
Zm00001d031348_P001	Maize	cytosol	51.23	62.65
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	50.74	62.05
Os02t0699600-01	Rice	nucleus	50.74	62.05
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	50.25	61.82
TraesCS2A01G443200.1	Wheat	cytosol	50.25	61.45
TraesCS2B01G464300.1	Wheat	golgi, plastid	50.25	61.45
TraesCS2D01G442300.1	Wheat	cytosol	50.25	61.45
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	49.75	61.21
Solyc11g069440.1.1	Tomato	nucleus, plastid	48.77	59.64
PGSC0003DMT400083480	Potato	cytosol	48.77	59.64
PGSC0003DMT400020871	Potato	cytosol	48.77	59.64
PGSC0003DMT400008687	Potato	cytosol	48.77	59.64
Solyc06g075180.1.1	Tomato	nucleus	48.77	59.64
Solyc11g065670.1.1	Tomato	cytosol	48.77	59.64
VIT_06s0004g02840.t01	Wine grape	cytosol	47.78	58.43
VIT_08s0040g01870.t01	Wine grape	cytosol	47.78	58.43
VIT_13s0019g04300.t01	Wine grape	cytosol	47.29	57.83
CDY13296	Canola	cytosol	47.29	57.83
AT5G60670.1	Thale cress	cytosol	47.29	57.83
Bra003134.1-P	Field mustard	cytosol	47.29	57.83
CDY52760	Canola	cytosol	47.29	57.83
GSMUA_Achr10P...	Banana	cytosol	47.29	57.83
CDX78178	Canola	cytosol, extracellular	47.29	57.83
CDY56698	Canola	cytosol	47.29	57.83
GSMUA_Achr4P09610_001	Banana	cytosol	38.92	57.66
Solyc04g050410.1.1	Tomato	cytosol	13.3	57.45
Bra039787.1-P	Field mustard	cytosol	46.8	57.23
GSMUA_Achr8P23840_001	Banana	cytosol	46.8	57.23
Bra039782.1-P	Field mustard	cytosol	46.8	57.23
Bra006998.1-P	Field mustard	cytosol	46.8	57.23
KRH32476	Soybean	endoplasmic reticulum	46.8	57.23
CDX76214	Canola	cytosol	46.8	57.23
CDY30876	Canola	cytosol	46.8	57.23
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	46.31	56.63
KRH29917	Soybean	endoplasmic reticulum, nucleus	46.31	56.63
AT3G53430.1	Thale cress	cytosol	46.31	56.63
Bra017204.1-P	Field mustard	cytosol	46.31	56.63
Bra023104.1-P	Field mustard	cytosol	46.31	56.63
CDY46760	Canola	cytosol	46.31	56.63
CDY53628	Canola	cytosol	46.31	56.63
CDY70392	Canola	cytosol	46.31	56.63
KRH19864	Soybean	endoplasmic reticulum	46.31	56.63
AT2G37190.1	Thale cress	cytosol	46.31	56.63
Bra002460.1-P	Field mustard	cytosol	45.81	56.02
CDY31522	Canola	cytosol	45.81	56.02
CDY27019	Canola	cytosol	44.83	54.49
TraesCS6B01G295500.1	Wheat	cytosol	33.99	54.33
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	50.25	53.4
HORVU6Hr1G067870.1	Barley	cytosol, plastid	49.75	51.79
GSMUA_Achr6P03690_001	Banana	cytosol	37.93	44.51
GSMUA_Achr7P19710_001	Banana	cytosol	37.93	40.74
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	23.65	40.34
CDX91342	Canola	cytosol	10.34	39.62
Solyc04g050420.1.1	Tomato	cytosol	24.14	38.28
Solyc04g050380.1.1	Tomato	plastid	26.11	37.32
Solyc04g050390.1.1	Tomato	plastid	26.11	36.81
Solyc04g050340.1.1	Tomato	cytosol	12.81	31.71
Solyc04g050430.1.1	Tomato	cytosol	12.81	28.57
GSMUA_Achr10P...	Banana	cytosol	16.75	27.42
CDX74982	Canola	nucleus	7.39	18.07
Bra005214.1-P	Field mustard	nucleus	7.39	18.07

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	UniProt:A0A1D6N9V5	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036769
ProteinID:ONM37326.1	PFAM:PD311621	PFAM:PF00298	PFAM:PF07807	ScanProsite:PS00359	PANTHER:PTHR11661
PANTHER:PTHR11661:SF2	InterPro:RED_C	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf
SMART:SM00649	SUPFAM:SSF46906	UniParc:UPI000220FB9E	EnsemblPlantsGene:Zm00001d043268	EnsemblPlants:Zm00001d043268_P001	EnsemblPlants:Zm00001d043268_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L12-3

Coordinates

chr3:-:193854722..193855913

Molecular Weight (calculated)

22865.3 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.899

Length

203 amino acids

Sequence
(BLAST)

001: MPPKLDPSKV VEVFVRVTGG EAKVSVIPSA AALVIKALKE LERDRKKVKN IKHSDNISLD DVIEIAKTMR HRSMAKELAG TVKEILGTCV SVGCTVDGKD
101: PKDLQQEIDD GEAKGRLHRW DFETEEEWAK YNDQKEAMPK AAFQFGVKMQ DDRKTRKQNK DQKLTNDLHK INKILARKKG EKDGVEDGGH YDDDLPSSKK
201: QRG

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.