Factsheet for Bra002460.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31522	Canola	cytosol	100.0	100.0
AT5G60670.1	Thale cress	cytosol	96.99	96.99
Bra039787.1-P	Field mustard	cytosol	94.58	94.58
Bra039782.1-P	Field mustard	cytosol	94.58	94.58
Bra003134.1-P	Field mustard	cytosol	93.37	93.37
Bra023104.1-P	Field mustard	cytosol	93.37	93.37
Bra017204.1-P	Field mustard	cytosol	93.37	93.37
Bra006998.1-P	Field mustard	cytosol	92.77	92.77
TraesCS6B01G295500.1	Wheat	cytosol	68.67	89.76
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	87.95	88.48
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	87.35	87.88
TraesCS2D01G442300.1	Wheat	cytosol	87.35	87.35
TraesCS2B01G464300.1	Wheat	golgi, plastid	87.35	87.35
TraesCS2A01G443200.1	Wheat	cytosol	87.35	87.35
Zm00001d002450_P001	Maize	cytosol	86.75	86.75
Zm00001d051543_P001	Maize	plastid	86.14	86.14
Zm00001d017719_P001	Maize	plastid	86.14	86.14
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	86.14	86.14
Os02t0699600-01	Rice	nucleus	86.14	86.14
EES10673	Sorghum	cytosol	86.14	86.14
EES07409	Sorghum	cytosol	86.14	86.14
EES11363	Sorghum	cytosol	85.54	85.54
Zm00001d003896_P001	Maize	plastid	84.94	84.94
Zm00001d031348_P001	Maize	cytosol	81.33	81.33
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	86.75	75.39
HORVU6Hr1G067870.1	Barley	cytosol, plastid	87.95	74.87
Zm00001d010017_P001	Maize	cytosol	68.67	50.89
Bra005214.1-P	Field mustard	nucleus	24.7	49.4
Zm00001d043268_P001	Maize	cytosol	56.02	45.81

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	EnsemblPlantsGene:Bra002460	EnsemblPlants:Bra002460.1	EnsemblPlants:Bra002460.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR036769
InterPro:IPR036796	UniProt:M4CE29	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359
PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS
InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI00025440E9

Description

AT5G60670 (E=8e-088) | 60S ribosomal protein L12 (RPL12C)

Coordinates

chrA10:-:9395163..9395663

Molecular Weight (calculated)

17884.8 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.240

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV REILGTCVSV GCTVDGRDPK DLQEEIVSGD IEVPNE

Best Arabidopsis Sequence Match ( AT5G60670.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE

Arabidopsis Description

RPL12C60S ribosomal protein L12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.