Factsheet for Bra005214.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74982	Canola	nucleus	100.0	100.0
TraesCS6B01G295500.1	Wheat	cytosol	50.6	33.07
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	50.6	25.45
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	50.6	25.45
TraesCS2A01G443200.1	Wheat	cytosol	50.6	25.3
TraesCS2B01G464300.1	Wheat	golgi, plastid	50.6	25.3
TraesCS2D01G442300.1	Wheat	cytosol	50.6	25.3
Bra002460.1-P	Field mustard	cytosol	49.4	24.7
Bra039787.1-P	Field mustard	cytosol	49.4	24.7
Bra039782.1-P	Field mustard	cytosol	49.4	24.7
Bra023104.1-P	Field mustard	cytosol	49.4	24.7
Bra017204.1-P	Field mustard	cytosol	49.4	24.7
Zm00001d017719_P001	Maize	plastid	48.19	24.1
Zm00001d003896_P001	Maize	plastid	48.19	24.1
Zm00001d002450_P001	Maize	cytosol	48.19	24.1
Zm00001d051543_P001	Maize	plastid	48.19	24.1
Bra003134.1-P	Field mustard	cytosol	48.19	24.1
EES07409	Sorghum	cytosol	48.19	24.1
EES10673	Sorghum	cytosol	48.19	24.1
EES11363	Sorghum	cytosol	48.19	24.1
Bra006998.1-P	Field mustard	cytosol	46.99	23.49
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	46.99	23.49
KRH29917	Soybean	endoplasmic reticulum, nucleus	46.99	23.49
Os02t0699600-01	Rice	nucleus	45.78	22.89
KRH19864	Soybean	endoplasmic reticulum	45.78	22.89
PGSC0003DMT400083480	Potato	cytosol	45.78	22.89
PGSC0003DMT400020871	Potato	cytosol	45.78	22.89
PGSC0003DMT400008687	Potato	cytosol	45.78	22.89
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	45.78	22.89
KRH32476	Soybean	endoplasmic reticulum	45.78	22.89
Zm00001d031348_P001	Maize	cytosol	44.58	22.29
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	50.6	21.99
HORVU6Hr1G067870.1	Barley	cytosol, plastid	50.6	21.54
Zm00001d010017_P001	Maize	cytosol	26.51	9.82
GSMUA_Achr10P...	Banana	cytosol	13.25	8.87
Zm00001d043268_P001	Maize	cytosol	18.07	7.39
Solyc04g050410.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra005214.1	EnsemblPlants:Bra005214.1-P	EnsemblPlantsGene:Bra005214	Gene3D:3.30.1550.10	InterPro:IPR036796	InterPro:Ribosomal_L11/L12_N_sf
SEG:seg	UniParc:UPI00025479B2	UniProt:M4CLX7	MapMan:35.2	:	:

Description

AT3G53430 (E=1e-006) | 60S ribosomal protein L12 (RPL12B)

Coordinates

chrA05:+:4062474..4062725

Molecular Weight (calculated)

9252.2 Da

IEP (calculated)

10.691

GRAVY (calculated)

-0.577

Length

83 amino acids

Sequence
(BLAST)

1: MPPKLDPSQI LEVYIRVTGA ASSLAPKKIG EYIAQETAKK FEKLDPSEIV DVYLRVTGGE VGAVSSLPRR SRKKPPRNSR RWS

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.