Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 100.0 | 76.97 |
TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 99.21 | 76.36 |
Zm00001d051543_P001 | Maize | plastid | 96.85 | 74.1 |
Zm00001d017719_P001 | Maize | plastid | 96.85 | 74.1 |
Zm00001d003896_P001 | Maize | plastid | 96.85 | 74.1 |
Zm00001d002450_P001 | Maize | cytosol | 96.85 | 74.1 |
EES11363 | Sorghum | cytosol | 96.85 | 74.1 |
EES10673 | Sorghum | cytosol | 96.85 | 74.1 |
TraesCS2B01G464300.1 | Wheat | golgi, plastid | 96.85 | 74.1 |
EES07409 | Sorghum | cytosol | 96.85 | 74.1 |
Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 94.49 | 72.29 |
Os02t0699600-01 | Rice | nucleus | 94.49 | 72.29 |
VIT_06s0004g02840.t01 | Wine grape | cytosol | 92.91 | 71.08 |
VIT_08s0040g01870.t01 | Wine grape | cytosol | 92.91 | 71.08 |
AT2G37190.1 | Thale cress | cytosol | 92.91 | 71.08 |
AT3G53430.1 | Thale cress | cytosol | 92.13 | 70.48 |
CDY70392 | Canola | cytosol | 92.13 | 70.48 |
PGSC0003DMT400008687 | Potato | cytosol | 92.13 | 70.48 |
PGSC0003DMT400020871 | Potato | cytosol | 92.13 | 70.48 |
PGSC0003DMT400083480 | Potato | cytosol | 92.13 | 70.48 |
Solyc06g075180.1.1 | Tomato | nucleus | 92.13 | 70.48 |
Solyc11g065670.1.1 | Tomato | cytosol | 92.13 | 70.48 |
Solyc11g069440.1.1 | Tomato | nucleus, plastid | 92.13 | 70.48 |
CDX76214 | Canola | cytosol | 92.13 | 70.48 |
Bra039787.1-P | Field mustard | cytosol | 92.13 | 70.48 |
CDY46760 | Canola | cytosol | 92.13 | 70.48 |
Bra039782.1-P | Field mustard | cytosol | 92.13 | 70.48 |
Bra023104.1-P | Field mustard | cytosol | 92.13 | 70.48 |
Bra017204.1-P | Field mustard | cytosol | 92.13 | 70.48 |
CDY30876 | Canola | cytosol | 92.13 | 70.48 |
CDY56698 | Canola | cytosol | 91.34 | 69.88 |
CDY13296 | Canola | cytosol | 91.34 | 69.88 |
KRH32476 | Soybean | endoplasmic reticulum | 91.34 | 69.88 |
KRH29917 | Soybean | endoplasmic reticulum, nucleus | 91.34 | 69.88 |
KRH25012 | Soybean | cytosol, endoplasmic reticulum, nucleus | 91.34 | 69.88 |
VIT_13s0019g04300.t01 | Wine grape | cytosol | 91.34 | 69.88 |
CDY52760 | Canola | cytosol | 91.34 | 69.88 |
KRH19864 | Soybean | endoplasmic reticulum | 90.55 | 69.28 |
GSMUA_Achr8P23840_001 | Banana | cytosol | 90.55 | 69.28 |
Bra003134.1-P | Field mustard | cytosol | 90.55 | 69.28 |
Zm00001d031348_P001 | Maize | cytosol | 90.55 | 69.28 |
AT5G60670.1 | Thale cress | cytosol | 90.55 | 69.28 |
CDX78178 | Canola | cytosol, extracellular | 90.55 | 69.28 |
CDY31522 | Canola | cytosol | 89.76 | 68.67 |
Bra006998.1-P | Field mustard | cytosol | 89.76 | 68.67 |
Bra002460.1-P | Field mustard | cytosol | 89.76 | 68.67 |
GSMUA_Achr10P... | Banana | cytosol | 89.76 | 68.67 |
CDY53628 | Canola | cytosol | 88.98 | 68.07 |
CDY27019 | Canola | cytosol | 88.19 | 67.07 |
HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 99.21 | 64.62 |
CDX91342 | Canola | cytosol | 26.77 | 64.15 |
GSMUA_Achr4P09610_001 | Banana | cytosol | 68.5 | 63.5 |
Bra005214.1-P | Field mustard | nucleus | 33.07 | 50.6 |
CDX74982 | Canola | nucleus | 33.07 | 50.6 |
GSMUA_Achr6P03690_001 | Banana | cytosol | 68.5 | 50.29 |
Solyc04g050370.1.1 | Tomato | cytosol | 26.77 | 50.0 |
GSMUA_Achr7P19710_001 | Banana | cytosol | 68.5 | 46.03 |
Zm00001d010017_P001 | Maize | cytosol | 70.87 | 40.18 |
Solyc04g050410.1.1 | Tomato | cytosol | 13.39 | 36.17 |
Solyc04g050360.1.1 | Tomato | cytosol | 13.39 | 34.0 |
Zm00001d043268_P001 | Maize | cytosol | 54.33 | 33.99 |
Solyc04g050420.1.1 | Tomato | cytosol | 30.71 | 30.47 |
Solyc04g050400.1.1 | Tomato | endoplasmic reticulum, vacuole | 22.05 | 23.53 |
GSMUA_Achr10P... | Banana | cytosol | 21.26 | 21.77 |
Solyc04g050380.1.1 | Tomato | plastid | 22.05 | 19.72 |
Solyc04g050390.1.1 | Tomato | plastid | 21.26 | 18.75 |
Solyc04g050430.1.1 | Tomato | cytosol | 7.87 | 10.99 |
Solyc04g050340.1.1 | Tomato | cytosol | 6.3 | 9.76 |
Protein Annotations
Gene3D:1.10.10.250 | MapMan:17.1.2.1.12 | Gene3D:3.30.1550.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036769 |
InterPro:IPR036796 | PFAM:PF03946 | PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:Ribosomal_L11/L12 | InterPro:Ribosomal_L11/L12_N_sf |
InterPro:Ribosomal_L11_C_sf | InterPro:Ribosomal_L11_N | SMART:SM00649 | SUPFAM:SSF54747 | EnsemblPlantsGene:TraesCS6B01G295500 | EnsemblPlants:TraesCS6B01G295500.1 |
Description
No Description!
Coordinates
chr6B:+:530572828..530573325
Molecular Weight (calculated)
13588.5 Da
IEP (calculated)
9.852
GRAVY (calculated)
-0.398
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKLDPSQI VEVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGCTVDGKD PKDLQTEIDD GEVEIPA
101: HSGCTVDGKD PKDLQTEIDD GEVEIPA
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
Arabidopsis Description
RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.