CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32476	Soybean	endoplasmic reticulum	98.8	98.8
KRH29917	Soybean	endoplasmic reticulum, nucleus	96.99	96.99
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	96.39	96.39
GSMUA_Achr4P09610_001	Banana	cytosol	79.52	96.35
GSMUA_Achr10P...	Banana	cytosol	94.58	94.58
VIT_13s0019g04300.t01	Wine grape	cytosol	94.58	94.58
Solyc11g069440.1.1	Tomato	nucleus, plastid	93.98	93.98
Solyc11g065670.1.1	Tomato	cytosol	93.98	93.98
GSMUA_Achr8P23840_001	Banana	cytosol	93.98	93.98
Solyc06g075180.1.1	Tomato	nucleus	93.37	93.37
PGSC0003DMT400083480	Potato	cytosol	93.37	93.37
PGSC0003DMT400020871	Potato	cytosol	93.37	93.37
PGSC0003DMT400008687	Potato	cytosol	92.77	92.77
Os02t0699600-01	Rice	nucleus	90.96	90.96
TraesCS6B01G295500.1	Wheat	cytosol	69.28	90.55
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	89.76	89.76
Zm00001d003896_P001	Maize	plastid	89.76	89.76
Zm00001d017719_P001	Maize	plastid	89.76	89.76
Zm00001d051543_P001	Maize	plastid	89.76	89.76
EES10673	Sorghum	cytosol	89.76	89.76
EES07409	Sorghum	cytosol	89.76	89.76
Zm00001d002450_P001	Maize	cytosol	89.16	89.16
EES11363	Sorghum	cytosol	89.16	89.16
AT2G37190.1	Thale cress	cytosol	87.95	87.95
TraesCS2D01G442300.1	Wheat	cytosol	87.95	87.95
TraesCS2B01G464300.1	Wheat	golgi, plastid	87.95	87.95
TraesCS2A01G443200.1	Wheat	cytosol	87.95	87.95
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	87.35	87.88
AT3G53430.1	Thale cress	cytosol	87.35	87.35
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	86.75	87.27
AT5G60670.1	Thale cress	cytosol	86.75	86.75
Zm00001d031348_P001	Maize	cytosol	83.73	83.73
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	87.35	75.92
GSMUA_Achr6P03690_001	Banana	cytosol	78.92	75.72
HORVU6Hr1G067870.1	Barley	cytosol, plastid	87.35	74.36
GSMUA_Achr7P19710_001	Banana	cytosol	80.12	70.37
CDX91342	Canola	cytosol	19.28	60.38
Zm00001d010017_P001	Maize	cytosol	69.88	51.79
Zm00001d043268_P001	Maize	cytosol	56.63	46.31
CDX74982	Canola	nucleus	22.89	45.78
Bra005214.1-P	Field mustard	nucleus	22.89	45.78

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:100789561	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	EMBL:ACUP02008210	EnsemblPlantsGene:GLYMA_13G140100
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	GO:GO:0030529	UniProt:I1LZ47
InterPro:IPR036769	InterPro:IPR036796	EnsemblPlants:KRH19864	ProteinID:KRH19864	ProteinID:KRH19864.1	HAMAP:MF_00736
PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649
SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI000233ADBA	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:25272079..25273277

Molecular Weight (calculated)

17759.6 Da

IEP (calculated)

9.634

GRAVY (calculated)

-0.257

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPSQV VDVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV VEIARVMSPR SMAKDLSGTI KEILGTCVSV GCTVDGKDPK DLQQEISDGD VEVPLH

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.