Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P09610_001 | Banana | cytosol | 70.9 | 97.81 |
| KRH32476 | Soybean | endoplasmic reticulum | 70.37 | 80.12 |
| GSMUA_Achr10P... | Banana | cytosol | 70.37 | 80.12 |
| KRH19864 | Soybean | endoplasmic reticulum | 70.37 | 80.12 |
| GSMUA_Achr8P23840_001 | Banana | cytosol | 69.84 | 79.52 |
| VIT_13s0019g04300.t01 | Wine grape | cytosol | 69.31 | 78.92 |
| KRH29917 | Soybean | endoplasmic reticulum, nucleus | 68.25 | 77.71 |
| KRH25012 | Soybean | cytosol, endoplasmic reticulum, nucleus | 67.72 | 77.11 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 67.2 | 76.51 |
| Solyc11g065670.1.1 | Tomato | cytosol | 67.2 | 76.51 |
| GSMUA_Achr6P03690_001 | Banana | cytosol | 69.84 | 76.3 |
| Solyc06g075180.1.1 | Tomato | nucleus | 66.67 | 75.9 |
| PGSC0003DMT400083480 | Potato | cytosol | 66.67 | 75.9 |
| PGSC0003DMT400020871 | Potato | cytosol | 66.67 | 75.9 |
| PGSC0003DMT400008687 | Potato | cytosol | 66.14 | 75.3 |
| Os02t0699600-01 | Rice | nucleus | 65.61 | 74.7 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 64.55 | 73.49 |
| TraesCS2A01G443200.1 | Wheat | cytosol | 63.49 | 72.29 |
| TraesCS2B01G464300.1 | Wheat | golgi, plastid | 63.49 | 72.29 |
| TraesCS2D01G442300.1 | Wheat | cytosol | 63.49 | 72.29 |
| Zm00001d003896_P001 | Maize | plastid | 63.49 | 72.29 |
| Zm00001d017719_P001 | Maize | plastid | 63.49 | 72.29 |
| Zm00001d051543_P001 | Maize | plastid | 63.49 | 72.29 |
| EES10673 | Sorghum | cytosol | 63.49 | 72.29 |
| EES07409 | Sorghum | cytosol | 63.49 | 72.29 |
| EES11363 | Sorghum | cytosol | 62.96 | 71.69 |
| Zm00001d002450_P001 | Maize | cytosol | 62.96 | 71.69 |
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 62.43 | 71.52 |
| AT2G37190.1 | Thale cress | cytosol | 62.43 | 71.08 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 61.9 | 70.91 |
| AT5G60670.1 | Thale cress | cytosol | 61.9 | 70.48 |
| AT3G53430.1 | Thale cress | cytosol | 61.9 | 70.48 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 46.03 | 68.5 |
| Zm00001d031348_P001 | Maize | cytosol | 59.26 | 67.47 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 62.96 | 62.3 |
| HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 62.96 | 61.03 |
| Zm00001d010017_P001 | Maize | cytosol | 46.56 | 39.29 |
| Zm00001d043268_P001 | Maize | cytosol | 40.74 | 37.93 |
| GSMUA_Achr10P... | Banana | cytosol | 20.11 | 30.65 |
Protein Annotations
| Gene3D:1.10.10.250 | MapMan:17.1.2.1.12 | Gene3D:3.30.1550.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 |
| EnsemblPlantsGene:GSMUA_Achr7G19710_001 | EnsemblPlants:GSMUA_Achr7P19710_001 | EnsemblPlants:GSMUA_Achr7T19710_001 | InterPro:IPR036769 | InterPro:IPR036796 | UniProt:M0TJ08 |
| PFAM:PF00298 | PFAM:PF03946 | ScanProsite:PS00359 | PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:Ribosomal_L11/L12 |
| InterPro:Ribosomal_L11/L12_N_sf | InterPro:Ribosomal_L11_C | InterPro:Ribosomal_L11_CS | InterPro:Ribosomal_L11_C_sf | InterPro:Ribosomal_L11_N | SMART:SM00649 |
| SUPFAM:SSF46906 | SUPFAM:SSF54747 | UniParc:UPI0002950F2F | : | : | : |
Description
60S ribosomal protein L12 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19710_001]
Coordinates
chr7:+:22634427..22635399
Molecular Weight (calculated)
20467.7 Da
IEP (calculated)
7.415
GRAVY (calculated)
-0.244
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIHDISKLM IVDTNRSKDE RIYIYVFGVA AVSFSAKTLA PKSRFSAVAA VEMPPKFDPT QVVDVYVRVT GGEVGAASSL APKIGPLGLS PKKIGEDIAK
101: ETAKDWKGLR EPERDRKKTK NIKHNGNISL DDVVEIARVM SPRSMAKDLS GTVKEILGTC VSVGCTVDGK DPKDLQQEIS DGDVEVPLE
101: ETAKDWKGLR EPERDRKKTK NIKHNGNISL DDVVEIARVM SPRSMAKDLS GTVKEILGTC VSVGCTVDGK DPKDLQQEIS DGDVEVPLE
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
Arabidopsis Description
RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.