Factsheet for TraesCS6D01G246600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G295500.1	Wheat	cytosol	76.97	100.0
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	99.39	99.39
TraesCS2D01G442300.1	Wheat	cytosol	96.97	96.39
EES10673	Sorghum	cytosol	95.15	94.58
EES07409	Sorghum	cytosol	95.15	94.58
Zm00001d002450_P001	Maize	cytosol	95.15	94.58
EES11363	Sorghum	cytosol	94.55	93.98
Zm00001d051543_P001	Maize	plastid	94.55	93.98
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	93.94	93.37
Zm00001d017719_P001	Maize	plastid	93.94	93.37
Os02t0699600-01	Rice	nucleus	93.33	92.77
Zm00001d003896_P001	Maize	plastid	93.33	92.77
VIT_08s0040g01870.t01	Wine grape	cytosol	90.91	90.36
VIT_06s0004g02840.t01	Wine grape	cytosol	90.91	90.36
PGSC0003DMT400008687	Potato	cytosol	90.3	89.76
PGSC0003DMT400020871	Potato	cytosol	90.3	89.76
PGSC0003DMT400083480	Potato	cytosol	90.3	89.76
Solyc06g075180.1.1	Tomato	nucleus	90.3	89.76
Solyc11g069440.1.1	Tomato	nucleus, plastid	90.3	89.76
Solyc11g065670.1.1	Tomato	cytosol	90.3	89.76
CDX76214	Canola	cytosol	89.09	88.55
AT2G37190.1	Thale cress	cytosol	89.09	88.55
AT5G60670.1	Thale cress	cytosol	89.09	88.55
CDY70392	Canola	cytosol	89.09	88.55
Bra017204.1-P	Field mustard	cytosol	89.09	88.55
CDY46760	Canola	cytosol	89.09	88.55
Bra023104.1-P	Field mustard	cytosol	89.09	88.55
CDY30876	Canola	cytosol	89.09	88.55
Bra039782.1-P	Field mustard	cytosol	89.09	88.55
VIT_13s0019g04300.t01	Wine grape	cytosol	89.09	88.55
Bra039787.1-P	Field mustard	cytosol	89.09	88.55
Zm00001d031348_P001	Maize	cytosol	88.48	87.95
AT3G53430.1	Thale cress	cytosol	88.48	87.95
GSMUA_Achr8P23840_001	Banana	cytosol	88.48	87.95
CDY13296	Canola	cytosol	88.48	87.95
CDY52760	Canola	cytosol	88.48	87.95
CDY56698	Canola	cytosol	88.48	87.95
Bra002460.1-P	Field mustard	cytosol	87.88	87.35
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	87.88	87.35
KRH29917	Soybean	endoplasmic reticulum, nucleus	87.88	87.35
KRH32476	Soybean	endoplasmic reticulum	87.88	87.35
Bra003134.1-P	Field mustard	cytosol	87.88	87.35
CDX78178	Canola	cytosol, extracellular	87.88	87.35
CDY31522	Canola	cytosol	87.88	87.35
GSMUA_Achr10P...	Banana	cytosol	87.88	87.35
KRH19864	Soybean	endoplasmic reticulum	87.27	86.75
Bra006998.1-P	Field mustard	cytosol	87.27	86.75
CDY53628	Canola	cytosol	87.27	86.75
GSMUA_Achr4P09610_001	Banana	cytosol	70.91	85.4
CDY27019	Canola	cytosol	86.06	85.03
HORVU6Hr1G067870.1	Barley	cytosol, plastid	99.39	84.1
Solyc04g050370.1.1	Tomato	cytosol	31.52	76.47
Solyc04g050360.1.1	Tomato	cytosol	21.82	72.0
GSMUA_Achr6P03690_001	Banana	cytosol	70.3	67.05
CDX91342	Canola	cytosol	20.61	64.15
GSMUA_Achr7P19710_001	Banana	cytosol	70.91	61.9
Solyc04g050410.1.1	Tomato	cytosol	16.36	57.45
Zm00001d010017_P001	Maize	cytosol	75.15	55.36
CDX74982	Canola	nucleus	25.45	50.6
Bra005214.1-P	Field mustard	nucleus	25.45	50.6
Zm00001d043268_P001	Maize	cytosol	61.82	50.25
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	31.52	43.7
Solyc04g050420.1.1	Tomato	cytosol	32.12	41.41
Solyc04g050380.1.1	Tomato	plastid	33.33	38.73
Solyc04g050390.1.1	Tomato	plastid	32.73	37.5
Solyc04g050340.1.1	Tomato	cytosol	15.76	31.71
GSMUA_Achr10P...	Banana	cytosol	23.64	31.45
Solyc04g050430.1.1	Tomato	cytosol	15.76	28.57

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036769
InterPro:IPR036796	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661
PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf
InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	EnsemblPlantsGene:TraesCS6D01G246600	EnsemblPlants:TraesCS6D01G246600.1
TIGR:cd00349	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:349914727..349915457

Molecular Weight (calculated)

17621.6 Da

IEP (calculated)

9.526

GRAVY (calculated)

-0.194

Length

165 amino acids

Sequence
(BLAST)

001: MPPKLDPSQI VEVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGNISLDDV IEIAKIMKVR SMAKEMAGTV KEILGTCVSV GCTVDGKDPK DLQTEIDDGE VEIPA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.