Factsheet for Solyc04g050370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050410.1.1	Tomato	cytosol	48.53	70.21
Solyc04g050360.1.1	Tomato	cytosol	42.65	58.0
Solyc04g050420.1.1	Tomato	cytosol	73.53	39.06
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	64.71	36.97
Solyc04g050390.1.1	Tomato	plastid	75.0	35.42
Solyc06g075180.1.1	Tomato	nucleus	85.29	34.94
VIT_08s0040g01870.t01	Wine grape	cytosol	85.29	34.94
VIT_06s0004g02840.t01	Wine grape	cytosol	83.82	34.34
Solyc04g050380.1.1	Tomato	plastid	70.59	33.8
Solyc11g069440.1.1	Tomato	nucleus, plastid	82.35	33.73
Solyc11g065670.1.1	Tomato	cytosol	82.35	33.73
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	77.94	32.12
Zm00001d051543_P001	Maize	plastid	77.94	31.93
Zm00001d002450_P001	Maize	cytosol	77.94	31.93
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	77.94	31.93
Os02t0699600-01	Rice	nucleus	77.94	31.93
Zm00001d017719_P001	Maize	plastid	77.94	31.93
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	76.47	31.52
EES11363	Sorghum	cytosol	76.47	31.33
EES10673	Sorghum	cytosol	76.47	31.33
EES07409	Sorghum	cytosol	76.47	31.33
TraesCS2A01G443200.1	Wheat	cytosol	76.47	31.33
TraesCS2B01G464300.1	Wheat	golgi, plastid	76.47	31.33
TraesCS2D01G442300.1	Wheat	cytosol	76.47	31.33
AT5G60670.1	Thale cress	cytosol	76.47	31.33
Zm00001d003896_P001	Maize	plastid	75.0	30.72
Zm00001d031348_P001	Maize	cytosol	75.0	30.72
AT3G53430.1	Thale cress	cytosol	73.53	30.12
AT2G37190.1	Thale cress	cytosol	73.53	30.12
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	76.47	27.23
HORVU6Hr1G067870.1	Barley	cytosol, plastid	77.94	27.18
TraesCS6B01G295500.1	Wheat	cytosol	50.0	26.77
Zm00001d043268_P001	Maize	cytosol	75.0	25.12
Zm00001d010017_P001	Maize	cytosol	76.47	23.21
Solyc04g050340.1.1	Tomato	cytosol	23.53	19.51
Solyc04g050430.1.1	Tomato	cytosol	25.0	18.68
GSMUA_Achr10P...	Banana	cytosol	32.35	17.74

Protein Annotations

Gene3D:1.10.10.250	MapMan:35.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625
InterPro:IPR036769	UniProt:K4BS09	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	SUPFAM:SSF46906	EnsemblPlantsGene:Solyc04g050370.1	EnsemblPlants:Solyc04g050370.1.1	UniParc:UPI0002766BEA

Description

No Description!

Coordinates

chr4:-:46883595..46883849

Molecular Weight (calculated)

7539.0 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.782

Length

68 amino acids

Sequence
(BLAST)

1: MKALKEAKRD RKKTKNIKHN GNISLDVAIE MSKEILGTCV SVGCTVDGKD PKDLQQEIID GDEEIPQD

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.