Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017204.1-P | Field mustard | cytosol | 98.8 | 98.8 |
| Bra023104.1-P | Field mustard | cytosol | 98.8 | 98.8 |
| CDY46760 | Canola | cytosol | 98.8 | 98.8 |
| CDY70392 | Canola | cytosol | 98.8 | 98.8 |
| AT3G53430.1 | Thale cress | cytosol | 98.19 | 98.19 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 71.08 | 92.91 |
| AT5G60670.1 | Thale cress | cytosol | 92.77 | 92.77 |
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 89.16 | 89.7 |
| Zm00001d051543_P001 | Maize | plastid | 89.16 | 89.16 |
| Zm00001d017719_P001 | Maize | plastid | 89.16 | 89.16 |
| VIT_13s0019g04300.t01 | Wine grape | cytosol | 89.16 | 89.16 |
| VIT_08s0040g01870.t01 | Wine grape | cytosol | 89.16 | 89.16 |
| VIT_06s0004g02840.t01 | Wine grape | cytosol | 89.16 | 89.16 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 89.16 | 89.16 |
| Os02t0699600-01 | Rice | nucleus | 89.16 | 89.16 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 88.55 | 89.09 |
| EES10673 | Sorghum | cytosol | 88.55 | 88.55 |
| TraesCS2B01G464300.1 | Wheat | golgi, plastid | 88.55 | 88.55 |
| TraesCS2A01G443200.1 | Wheat | cytosol | 88.55 | 88.55 |
| TraesCS2D01G442300.1 | Wheat | cytosol | 88.55 | 88.55 |
| Zm00001d002450_P001 | Maize | cytosol | 88.55 | 88.55 |
| Zm00001d003896_P001 | Maize | plastid | 88.55 | 88.55 |
| EES07409 | Sorghum | cytosol | 88.55 | 88.55 |
| KRH29917 | Soybean | endoplasmic reticulum, nucleus | 88.55 | 88.55 |
| KRH25012 | Soybean | cytosol, endoplasmic reticulum, nucleus | 88.55 | 88.55 |
| GSMUA_Achr4P09610_001 | Banana | cytosol | 72.89 | 88.32 |
| KRH19864 | Soybean | endoplasmic reticulum | 87.95 | 87.95 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 87.95 | 87.95 |
| EES11363 | Sorghum | cytosol | 87.95 | 87.95 |
| GSMUA_Achr10P... | Banana | cytosol | 87.95 | 87.95 |
| Solyc11g065670.1.1 | Tomato | cytosol | 87.95 | 87.95 |
| PGSC0003DMT400020871 | Potato | cytosol | 87.35 | 87.35 |
| PGSC0003DMT400083480 | Potato | cytosol | 87.35 | 87.35 |
| GSMUA_Achr8P23840_001 | Banana | cytosol | 87.35 | 87.35 |
| KRH32476 | Soybean | endoplasmic reticulum | 87.35 | 87.35 |
| Solyc06g075180.1.1 | Tomato | nucleus | 86.75 | 86.75 |
| PGSC0003DMT400008687 | Potato | cytosol | 86.14 | 86.14 |
| Zm00001d031348_P001 | Maize | cytosol | 83.13 | 83.13 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 87.95 | 76.44 |
| HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 89.16 | 75.9 |
| Solyc04g050360.1.1 | Tomato | cytosol | 22.29 | 74.0 |
| Solyc04g050370.1.1 | Tomato | cytosol | 30.12 | 73.53 |
| GSMUA_Achr6P03690_001 | Banana | cytosol | 71.08 | 68.21 |
| GSMUA_Achr7P19710_001 | Banana | cytosol | 71.08 | 62.43 |
| Solyc04g050410.1.1 | Tomato | cytosol | 15.66 | 55.32 |
| Zm00001d010017_P001 | Maize | cytosol | 69.28 | 51.34 |
| Zm00001d043268_P001 | Maize | cytosol | 56.63 | 46.31 |
| Solyc04g050400.1.1 | Tomato | endoplasmic reticulum, vacuole | 30.12 | 42.02 |
| Solyc04g050420.1.1 | Tomato | cytosol | 31.33 | 40.62 |
| Solyc04g050380.1.1 | Tomato | plastid | 32.53 | 38.03 |
| Solyc04g050390.1.1 | Tomato | plastid | 31.93 | 36.81 |
| Solyc04g050340.1.1 | Tomato | cytosol | 15.66 | 31.71 |
| GSMUA_Achr10P... | Banana | cytosol | 23.49 | 31.45 |
| Solyc04g050430.1.1 | Tomato | cytosol | 15.66 | 28.57 |
Protein Annotations
| Gene3D:1.10.10.250 | MapMan:17.1.2.1.12 | Gene3D:3.30.1550.10 | EntrezGene:818295 | EntrezGene:824511 | UniProt:A0A178VR43 |
| ProteinID:AAD18140.1 | ProteinID:AEC09364.1 | ProteinID:AEE79085.1 | EMBL:AF372896 | EMBL:AK226484 | ArrayExpress:AT2G37190 |
| EnsemblPlantsGene:AT2G37190 | RefSeq:AT2G37190 | TAIR:AT2G37190 | RefSeq:AT2G37190-TAIR-G | EnsemblPlants:AT2G37190.1 | TAIR:AT2G37190.1 |
| EMBL:AY086293 | EMBL:AY140102 | EMBL:BT002590 | EMBL:BT002673 | ProteinID:CAB67650.1 | GO:GO:0000027 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | InterPro:IPR036769 |
| InterPro:IPR036796 | HAMAP:MF_00736 | RefSeq:NP_181256.1 | RefSeq:NP_190911.1 | ProteinID:OAP04579.1 | ProteinID:OAP08910.1 |
| UniProt:P50883 | PFAM:PF00298 | PFAM:PF03946 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00359 | PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | InterPro:Ribosomal_L11/L12 |
| InterPro:Ribosomal_L11/L12_N_sf | InterPro:Ribosomal_L11_C | InterPro:Ribosomal_L11_CS | InterPro:Ribosomal_L11_C_sf | InterPro:Ribosomal_L11_N | SMART:SM00649 |
| SUPFAM:SSF46906 | SUPFAM:SSF54747 | UniParc:UPI0000000AC0 | EMBL:Z17756 | : | : |
Description
RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
Coordinates
chr2:-:15619206..15620156
Molecular Weight (calculated)
17942.8 Da
IEP (calculated)
9.575
GRAVY (calculated)
-0.330
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.