Factsheet for PGSC0003DMT400020871

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083480	Potato	cytosol	100.0	100.0
Solyc11g069440.1.1	Tomato	nucleus, plastid	99.4	99.4
PGSC0003DMT400008687	Potato	cytosol	98.19	98.19
VIT_13s0019g04300.t01	Wine grape	cytosol	93.98	93.98
KRH19864	Soybean	endoplasmic reticulum	93.37	93.37
KRH32476	Soybean	endoplasmic reticulum	92.77	92.77
KRH29917	Soybean	endoplasmic reticulum, nucleus	92.77	92.77
Zm00001d002450_P001	Maize	cytosol	92.17	92.17
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	92.17	92.17
TraesCS6B01G295500.1	Wheat	cytosol	70.48	92.13
GSMUA_Achr4P09610_001	Banana	cytosol	75.9	91.97
Zm00001d051543_P001	Maize	plastid	91.57	91.57
GSMUA_Achr10P...	Banana	cytosol	91.57	91.57
GSMUA_Achr8P23840_001	Banana	cytosol	90.96	90.96
Zm00001d017719_P001	Maize	plastid	90.96	90.96
EES10673	Sorghum	cytosol	90.96	90.96
Os02t0699600-01	Rice	nucleus	90.96	90.96
EES07409	Sorghum	cytosol	90.96	90.96
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	90.36	90.91
TraesCS2A01G443200.1	Wheat	cytosol	90.36	90.36
Zm00001d003896_P001	Maize	plastid	90.36	90.36
TraesCS2D01G442300.1	Wheat	cytosol	90.36	90.36
TraesCS2B01G464300.1	Wheat	golgi, plastid	90.36	90.36
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	90.36	90.36
EES11363	Sorghum	cytosol	90.36	90.36
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	89.76	90.3
AT2G37190.1	Thale cress	cytosol	87.35	87.35
AT5G60670.1	Thale cress	cytosol	86.75	86.75
AT3G53430.1	Thale cress	cytosol	86.75	86.75
Zm00001d031348_P001	Maize	cytosol	86.75	86.75
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	90.36	78.53
HORVU6Hr1G067870.1	Barley	cytosol, plastid	90.36	76.92
GSMUA_Achr6P03690_001	Banana	cytosol	74.1	71.1
GSMUA_Achr7P19710_001	Banana	cytosol	75.9	66.67
CDX91342	Canola	cytosol	18.67	58.49
Zm00001d010017_P001	Maize	cytosol	72.29	53.57
Zm00001d043268_P001	Maize	cytosol	59.64	48.77
CDX74982	Canola	nucleus	22.89	45.78
Bra005214.1-P	Field mustard	nucleus	22.89	45.78

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:102589601	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	ProteinID:ABB29921	ProteinID:ABB29921.1
EMBL:DQ235164	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796
UniProt:M1D6Y3	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	EnsemblPlantsGene:PGSC0003DMG400008079	PGSC:PGSC0003DMG400008079
EnsemblPlants:PGSC0003DMT400020871	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf
InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906
SUPFAM:SSF54747	UniParc:UPI000294BBC0	RefSeq:XP_006340196.1	:	:	:

Description

60S ribosomal protein L12 [Source:PGSC_GENE;Acc:PGSC0003DMG400008079]

Coordinates

chr11:+:41674052..41674820

Molecular Weight (calculated)

17785.6 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.325

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPSQV VEVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET SKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV IEIAKVMQSR SMAKDLSGTV KEILGTCVSV GCTVDGKDPK DLQQEISDGD VEIPEN

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.