CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74982	Canola	nucleus	67.92	43.37
TraesCS6B01G295500.1	Wheat	cytosol	64.15	26.77
CDY53628	Canola	cytosol	66.04	21.08
CDY70392	Canola	cytosol	66.04	21.08
CDY56698	Canola	cytosol	66.04	21.08
CDY52760	Canola	cytosol	66.04	21.08
CDY46760	Canola	cytosol	66.04	21.08
CDY31522	Canola	cytosol	66.04	21.08
CDY30876	Canola	cytosol	66.04	21.08
CDY13296	Canola	cytosol	66.04	21.08
CDX76214	Canola	cytosol	66.04	21.08
CDY27019	Canola	cytosol	66.04	20.96
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	64.15	20.61
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	64.15	20.61
CDX78178	Canola	cytosol, extracellular	64.15	20.48
TraesCS2D01G442300.1	Wheat	cytosol	64.15	20.48
TraesCS2B01G464300.1	Wheat	golgi, plastid	64.15	20.48
TraesCS2A01G443200.1	Wheat	cytosol	64.15	20.48
KRH29917	Soybean	endoplasmic reticulum, nucleus	62.26	19.88
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	62.26	19.88
KRH19864	Soybean	endoplasmic reticulum	60.38	19.28
Zm00001d051543_P001	Maize	plastid	60.38	19.28
Zm00001d017719_P001	Maize	plastid	60.38	19.28
Zm00001d003896_P001	Maize	plastid	60.38	19.28
Zm00001d002450_P001	Maize	cytosol	60.38	19.28
EES07409	Sorghum	cytosol	60.38	19.28
EES10673	Sorghum	cytosol	60.38	19.28
EES11363	Sorghum	cytosol	60.38	19.28
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	60.38	19.28
Os02t0699600-01	Rice	nucleus	60.38	19.28
KRH32476	Soybean	endoplasmic reticulum	60.38	19.28
PGSC0003DMT400083480	Potato	cytosol	58.49	18.67
PGSC0003DMT400020871	Potato	cytosol	58.49	18.67
PGSC0003DMT400008687	Potato	cytosol	58.49	18.67
Zm00001d031348_P001	Maize	cytosol	56.6	18.07
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	64.15	17.8
HORVU6Hr1G067870.1	Barley	cytosol, plastid	64.15	17.44
Zm00001d043268_P001	Maize	cytosol	39.62	10.34
Zm00001d010017_P001	Maize	cytosol	39.62	9.38
GSMUA_Achr10P...	Banana	cytosol	18.87	8.06
Solyc04g050410.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX91342	EnsemblPlantsGene:GSBRNA2T00152628001	Gene3D:3.30.1550.10	GO:A0A078DR09	InterPro:IPR036796	InterPro:Ribosomal_L11/L12_N_sf
InterPro:Ribosomal_L11_N	PFAM:PF03946	ProteinID:CDX91342	ProteinID:CDX91342.1	SEG:seg	SUPFAM:SSF54747
UniParc:UPI0004EDBBE3	MapMan:35.2	:	:	:	:

Description

BnaC04g08080D

Coordinates

chrLK031867:-:123696..123995

Molecular Weight (calculated)

5654.0 Da

IEP (calculated)

12.155

GRAVY (calculated)

-0.449

Length

53 amino acids

Sequence
(BLAST)

1: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGSLGLALP RRSRKKPPRS SRR

Best Arabidopsis Sequence Match ( AT3G53430.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN

Arabidopsis Description

RPL12B60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.