Factsheet for Os04t0598200-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 23777608
plastid: 27992503
extracellular: 28232208

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0699600-01	Rice	nucleus	98.8	98.8
Zm00001d051543_P001	Maize	plastid	96.39	96.39
Zm00001d002450_P001	Maize	cytosol	96.39	96.39
Zm00001d017719_P001	Maize	plastid	95.78	95.78
Zm00001d003896_P001	Maize	plastid	95.78	95.78
EES10673	Sorghum	cytosol	95.78	95.78
EES07409	Sorghum	cytosol	95.78	95.78
EES11363	Sorghum	cytosol	95.18	95.18
TraesCS6B01G295500.1	Wheat	cytosol	72.29	94.49
TraesCS2D01G442300.1	Wheat	cytosol	93.98	93.98
TraesCS2B01G464300.1	Wheat	golgi, plastid	93.98	93.98
TraesCS2A01G443200.1	Wheat	cytosol	93.98	93.98
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	93.37	93.94
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	92.77	93.33
GSMUA_Achr10P...	Banana	cytosol	90.96	90.96
VIT_06s0004g02840.t01	Wine grape	cytosol	90.96	90.96
VIT_08s0040g01870.t01	Wine grape	cytosol	90.96	90.96
Solyc11g065670.1.1	Tomato	cytosol	90.36	90.36
PGSC0003DMT400083480	Potato	cytosol	90.36	90.36
PGSC0003DMT400020871	Potato	cytosol	90.36	90.36
Solyc11g069440.1.1	Tomato	nucleus, plastid	90.36	90.36
KRH32476	Soybean	endoplasmic reticulum	90.36	90.36
GSMUA_Achr8P23840_001	Banana	cytosol	90.36	90.36
VIT_13s0019g04300.t01	Wine grape	cytosol	90.36	90.36
Solyc06g075180.1.1	Tomato	nucleus	89.76	89.76
PGSC0003DMT400008687	Potato	cytosol	89.76	89.76
KRH29917	Soybean	endoplasmic reticulum, nucleus	89.76	89.76
KRH19864	Soybean	endoplasmic reticulum	89.76	89.76
CDX76214	Canola	cytosol	89.16	89.16
Zm00001d031348_P001	Maize	cytosol	89.16	89.16
CDY30876	Canola	cytosol	89.16	89.16
CDY70392	Canola	cytosol	89.16	89.16
Bra017204.1-P	Field mustard	cytosol	89.16	89.16
Bra023104.1-P	Field mustard	cytosol	89.16	89.16
AT2G37190.1	Thale cress	cytosol	89.16	89.16
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	89.16	89.16
Bra039787.1-P	Field mustard	cytosol	89.16	89.16
Bra039782.1-P	Field mustard	cytosol	89.16	89.16
CDY46760	Canola	cytosol	89.16	89.16
CDY13296	Canola	cytosol	88.55	88.55
CDY52760	Canola	cytosol	88.55	88.55
CDY56698	Canola	cytosol	88.55	88.55
Bra006998.1-P	Field mustard	cytosol	88.55	88.55
AT3G53430.1	Thale cress	cytosol	88.55	88.55
GSMUA_Achr4P09610_001	Banana	cytosol	72.89	88.32
Bra003134.1-P	Field mustard	cytosol	87.95	87.95
CDX78178	Canola	cytosol, extracellular	87.95	87.95
AT5G60670.1	Thale cress	cytosol	87.35	87.35
Bra002460.1-P	Field mustard	cytosol	86.14	86.14
CDY31522	Canola	cytosol	86.14	86.14
CDY27019	Canola	cytosol	86.14	85.63
CDY53628	Canola	cytosol	85.54	85.54
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	93.98	81.68
HORVU6Hr1G067870.1	Barley	cytosol, plastid	92.77	78.97
Solyc04g050370.1.1	Tomato	cytosol	31.93	77.94
Solyc04g050360.1.1	Tomato	cytosol	22.29	74.0
GSMUA_Achr6P03690_001	Banana	cytosol	72.29	69.36
GSMUA_Achr7P19710_001	Banana	cytosol	73.49	64.55
CDX91342	Canola	cytosol	19.28	60.38
Solyc04g050410.1.1	Tomato	cytosol	16.87	59.57
Zm00001d010017_P001	Maize	cytosol	75.3	55.8
Zm00001d043268_P001	Maize	cytosol	62.05	50.74
CDX74982	Canola	nucleus	22.89	45.78
Bra005214.1-P	Field mustard	nucleus	22.89	45.78
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	31.33	43.7
Solyc04g050420.1.1	Tomato	cytosol	31.93	41.41
Solyc04g050380.1.1	Tomato	plastid	33.13	38.73
Solyc04g050390.1.1	Tomato	plastid	33.13	38.19
GSMUA_Achr10P...	Banana	cytosol	24.7	33.06
Solyc04g050340.1.1	Tomato	cytosol	15.06	30.49
Solyc04g050430.1.1	Tomato	cytosol	15.06	27.47

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	EntrezGene:4336856	ProteinID:BAF15655.1	ProteinID:BAS90811.1
ProteinID:CAE03942.3	ProteinID:EAZ31852.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625
InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	EnsemblPlantsGene:Os04g0598200	EnsemblPlants:Os04t0598200-00	PFAM:PF00298
PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	UniProt:Q0JAI2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649
SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI00001A52BE	RefSeq:XP_015637137.1	:	:

Description

Similar to 60S ribosomal protein L12. (Os04t0598200-00)

Coordinates

chr4:+:30180330..30181981

Molecular Weight (calculated)

17748.7 Da

IEP (calculated)

9.896

GRAVY (calculated)

-0.228

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPTQV VDVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGNISLDDV IEIARIMRNR SMAKEMAGTV KEILGTCVSV GCTVDGKDPK DLQQEISDGE VEIPSA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.