CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76214	Canola	cytosol	92.81	93.37
CDY13296	Canola	cytosol	92.81	93.37
CDY30876	Canola	cytosol	92.81	93.37
CDY56698	Canola	cytosol	92.81	93.37
CDY52760	Canola	cytosol	92.81	93.37
CDX78178	Canola	cytosol, extracellular	92.22	92.77
CDY70392	Canola	cytosol	92.22	92.77
CDY46760	Canola	cytosol	92.22	92.77
CDY53628	Canola	cytosol	91.62	92.17
CDY31522	Canola	cytosol	91.02	91.57
TraesCS6B01G295500.1	Wheat	cytosol	67.07	88.19
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	85.63	86.67
Zm00001d051543_P001	Maize	plastid	85.63	86.14
Zm00001d017719_P001	Maize	plastid	85.63	86.14
TraesCS2D01G442300.1	Wheat	cytosol	85.63	86.14
TraesCS2B01G464300.1	Wheat	golgi, plastid	85.63	86.14
TraesCS2A01G443200.1	Wheat	cytosol	85.63	86.14
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	85.63	86.14
Os02t0699600-01	Rice	nucleus	85.63	86.14
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	85.03	86.06
Zm00001d002450_P001	Maize	cytosol	85.03	85.54
EES10673	Sorghum	cytosol	84.43	84.94
EES07409	Sorghum	cytosol	84.43	84.94
Zm00001d003896_P001	Maize	plastid	84.43	84.94
EES11363	Sorghum	cytosol	83.83	84.34
Zm00001d031348_P001	Maize	cytosol	79.64	80.12
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	85.03	74.35
HORVU6Hr1G067870.1	Barley	cytosol, plastid	85.63	73.33
CDX91342	Canola	cytosol	20.96	66.04
Zm00001d010017_P001	Maize	cytosol	67.07	50.0
CDX74982	Canola	nucleus	24.55	49.4
Zm00001d043268_P001	Maize	cytosol	54.49	44.83

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:A0A078GP99	UniProt:A0A078GP99	EnsemblPlants:CDY27019
ProteinID:CDY27019	ProteinID:CDY27019.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00036830001
InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359
PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS
InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI0004EE19DE
SEG:seg	:	:	:	:	:

Description

BnaA02g10390DBnaA02g10390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP99]

Coordinates

chrLK032199:-:13870..14373

Molecular Weight (calculated)

18279.5 Da

IEP (calculated)

10.282

GRAVY (calculated)

-0.109

Length

167 amino acids

Sequence
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQHFYYIFN VIFNIFS

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.