CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31522	Canola	cytosol	98.19	98.19
AT5G60670.1	Thale cress	cytosol	96.39	96.39
CDY13296	Canola	cytosol	94.58	94.58
CDY52760	Canola	cytosol	94.58	94.58
CDY56698	Canola	cytosol	94.58	94.58
CDX76214	Canola	cytosol	93.98	93.98
CDX78178	Canola	cytosol, extracellular	93.98	93.98
CDY30876	Canola	cytosol	93.98	93.98
CDY46760	Canola	cytosol	92.77	92.77
CDY70392	Canola	cytosol	92.77	92.77
CDY27019	Canola	cytosol	92.17	91.62
TraesCS6B01G295500.1	Wheat	cytosol	68.07	88.98
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	87.35	87.88
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	86.75	87.27
TraesCS2A01G443200.1	Wheat	cytosol	86.75	86.75
TraesCS2B01G464300.1	Wheat	golgi, plastid	86.75	86.75
TraesCS2D01G442300.1	Wheat	cytosol	86.75	86.75
Zm00001d002450_P001	Maize	cytosol	86.14	86.14
Zm00001d051543_P001	Maize	plastid	85.54	85.54
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	85.54	85.54
Os02t0699600-01	Rice	nucleus	85.54	85.54
Zm00001d017719_P001	Maize	plastid	85.54	85.54
EES10673	Sorghum	cytosol	85.54	85.54
EES07409	Sorghum	cytosol	85.54	85.54
EES11363	Sorghum	cytosol	84.94	84.94
Zm00001d003896_P001	Maize	plastid	84.34	84.34
Zm00001d031348_P001	Maize	cytosol	80.72	80.72
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	86.14	74.87
HORVU6Hr1G067870.1	Barley	cytosol, plastid	87.35	74.36
CDX91342	Canola	cytosol	21.08	66.04
Zm00001d010017_P001	Maize	cytosol	69.28	51.34
CDX74982	Canola	nucleus	24.7	49.4
Zm00001d043268_P001	Maize	cytosol	56.63	46.31

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:A0A078IX94	UniProt:A0A078IX94	EnsemblPlants:CDY53628
ProteinID:CDY53628	ProteinID:CDY53628.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00011103001
InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359
PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS
InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI0004EF43AC

Description

BnaC09g53910DBnaC09g53910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IX94]

Coordinates

chrLK033222:+:20230..21303

Molecular Weight (calculated)

17920.9 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.255

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV REILGTCVSV GCTVDGRDPK DLQEEIVNGD IDVPHE

Best Arabidopsis Sequence Match ( AT5G60670.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE

Arabidopsis Description

RPL12C60S ribosomal protein L12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.