CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039787.1-P	Field mustard	cytosol	100.0	100.0
CDX76214	Canola	cytosol	100.0	100.0
AT3G53430.1	Thale cress	cytosol	99.4	99.4
CDY56698	Canola	cytosol	99.4	99.4
CDY13296	Canola	cytosol	99.4	99.4
CDY52760	Canola	cytosol	99.4	99.4
CDY46760	Canola	cytosol	98.8	98.8
CDY70392	Canola	cytosol	98.8	98.8
CDX78178	Canola	cytosol, extracellular	98.8	98.8
CDY31522	Canola	cytosol	94.58	94.58
CDY53628	Canola	cytosol	93.98	93.98
CDY27019	Canola	cytosol	93.37	92.81
TraesCS6B01G295500.1	Wheat	cytosol	70.48	92.13
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	89.16	89.7
Zm00001d051543_P001	Maize	plastid	89.16	89.16
Zm00001d017719_P001	Maize	plastid	89.16	89.16
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	89.16	89.16
Os02t0699600-01	Rice	nucleus	89.16	89.16
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	88.55	89.09
TraesCS2A01G443200.1	Wheat	cytosol	88.55	88.55
TraesCS2B01G464300.1	Wheat	golgi, plastid	88.55	88.55
TraesCS2D01G442300.1	Wheat	cytosol	88.55	88.55
Zm00001d002450_P001	Maize	cytosol	88.55	88.55
EES10673	Sorghum	cytosol	87.95	87.95
EES07409	Sorghum	cytosol	87.95	87.95
Zm00001d003896_P001	Maize	plastid	87.95	87.95
EES11363	Sorghum	cytosol	87.35	87.35
Zm00001d031348_P001	Maize	cytosol	83.13	83.13
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	87.95	76.44
HORVU6Hr1G067870.1	Barley	cytosol, plastid	89.16	75.9
CDX91342	Canola	cytosol	21.08	66.04
Zm00001d010017_P001	Maize	cytosol	69.88	51.79
CDX74982	Canola	nucleus	24.7	49.4
Zm00001d043268_P001	Maize	cytosol	57.23	46.8

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:A0A078CJJ5	UniProt:A0A078CJJ5	EnsemblPlants:CDY30876
ProteinID:CDY30876	ProteinID:CDY30876.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00046365001
InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359
PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS
InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI0002545290
SEG:seg	:	:	:	:	:

Description

BnaC04g27310DBnaC04g27310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CJJ5]

Coordinates

chrLK032262:+:400898..401653

Molecular Weight (calculated)

17983.0 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.301

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN

Best Arabidopsis Sequence Match ( AT3G53430.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DLQQEIQEGE IEIPEN

Arabidopsis Description

RPL12B60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.