Factsheet for Zm00001d002450_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051543_P001	Maize	plastid	98.8	98.8
Zm00001d003896_P001	Maize	plastid	98.19	98.19
EES11363	Sorghum	cytosol	97.59	97.59
Zm00001d017719_P001	Maize	plastid	96.99	96.99
TraesCS6B01G295500.1	Wheat	cytosol	74.1	96.85
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	96.39	96.39
Os02t0699600-01	Rice	nucleus	95.78	95.78
TraesCS2A01G443200.1	Wheat	cytosol	95.18	95.18
TraesCS2B01G464300.1	Wheat	golgi, plastid	95.18	95.18
TraesCS2D01G442300.1	Wheat	cytosol	95.18	95.18
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	94.58	95.15
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	93.98	94.55
Zm00001d031348_P001	Maize	cytosol	92.77	92.77
Solyc11g069440.1.1	Tomato	nucleus, plastid	92.17	92.17
Solyc11g065670.1.1	Tomato	cytosol	92.17	92.17
Solyc06g075180.1.1	Tomato	nucleus	92.17	92.17
PGSC0003DMT400083480	Potato	cytosol	92.17	92.17
PGSC0003DMT400020871	Potato	cytosol	92.17	92.17
PGSC0003DMT400008687	Potato	cytosol	92.17	92.17
VIT_06s0004g02840.t01	Wine grape	cytosol	91.57	91.57
VIT_08s0040g01870.t01	Wine grape	cytosol	91.57	91.57
VIT_13s0019g04300.t01	Wine grape	cytosol	90.36	90.36
KRH32476	Soybean	endoplasmic reticulum	89.76	89.76
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	89.16	89.16
KRH29917	Soybean	endoplasmic reticulum, nucleus	89.16	89.16
KRH19864	Soybean	endoplasmic reticulum	89.16	89.16
GSMUA_Achr10P...	Banana	cytosol	89.16	89.16
CDY30876	Canola	cytosol	88.55	88.55
CDX76214	Canola	cytosol	88.55	88.55
Bra017204.1-P	Field mustard	cytosol	88.55	88.55
GSMUA_Achr8P23840_001	Banana	cytosol	88.55	88.55
Bra023104.1-P	Field mustard	cytosol	88.55	88.55
Bra039782.1-P	Field mustard	cytosol	88.55	88.55
AT2G37190.1	Thale cress	cytosol	88.55	88.55
CDY70392	Canola	cytosol	88.55	88.55
CDY46760	Canola	cytosol	88.55	88.55
Bra039787.1-P	Field mustard	cytosol	88.55	88.55
CDY13296	Canola	cytosol	87.95	87.95
CDY52760	Canola	cytosol	87.95	87.95
CDY56698	Canola	cytosol	87.95	87.95
AT5G60670.1	Thale cress	cytosol	87.95	87.95
AT3G53430.1	Thale cress	cytosol	87.95	87.95
GSMUA_Achr4P09610_001	Banana	cytosol	72.29	87.59
Bra003134.1-P	Field mustard	cytosol	87.35	87.35
CDX78178	Canola	cytosol, extracellular	87.35	87.35
Bra006998.1-P	Field mustard	cytosol	86.75	86.75
Bra002460.1-P	Field mustard	cytosol	86.75	86.75
CDY31522	Canola	cytosol	86.75	86.75
CDY53628	Canola	cytosol	86.14	86.14
CDY27019	Canola	cytosol	85.54	85.03
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	95.18	82.72
HORVU6Hr1G067870.1	Barley	cytosol, plastid	93.98	80.0
Solyc04g050370.1.1	Tomato	cytosol	31.93	77.94
Solyc04g050360.1.1	Tomato	cytosol	22.29	74.0
GSMUA_Achr6P03690_001	Banana	cytosol	70.48	67.63
GSMUA_Achr7P19710_001	Banana	cytosol	71.69	62.96
CDX91342	Canola	cytosol	19.28	60.38
Solyc04g050410.1.1	Tomato	cytosol	16.87	59.57
Zm00001d010017_P001	Maize	cytosol	78.92	58.48
Zm00001d043268_P001	Maize	cytosol	65.66	53.69
Bra005214.1-P	Field mustard	nucleus	24.1	48.19
CDX74982	Canola	nucleus	24.1	48.19
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	31.93	44.54
Solyc04g050420.1.1	Tomato	cytosol	32.53	42.19
Solyc04g050380.1.1	Tomato	plastid	34.34	40.14
Solyc04g050390.1.1	Tomato	plastid	33.73	38.89
Solyc04g050340.1.1	Tomato	cytosol	16.27	32.93
GSMUA_Achr10P...	Banana	cytosol	24.1	32.26
Solyc04g050430.1.1	Tomato	cytosol	16.27	29.67

Protein Annotations

Gene3D:1.10.10.250	EntrezGene:100284082	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	UniProt:B4FRM7	EMBL:BT039765
EMBL:BT065752	EMBL:EU961707	EMBL:EU966148	EMBL:EU967033	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	HAMAP:MF_00736	ProteinID:ONM14332.1	ProteinID:ONM14333.1
PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649
SUPFAM:SSF46906	SUPFAM:SSF54747	UniParc:UPI00017B75DC	EnsemblPlantsGene:Zm00001d002450	EnsemblPlants:Zm00001d002450_P001	EnsemblPlants:Zm00001d002450_T001

Description

60S ribosomal protein L12-3

Coordinates

chr2:-:12952260..12954772

Molecular Weight (calculated)

17718.6 Da

IEP (calculated)

9.614

GRAVY (calculated)

-0.261

Length

166 amino acids

Sequence
(BLAST)

001: MPPKLDPSQV VEVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HSGNISLDDV IEIAKTMRNR SMAKELAGTV KEILGTCVSV GCTVDGKDPK DLQQEIDDGE VEIPSA

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.