Factsheet for GSMUA_Achr6P03690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09610_001	Banana	cytosol	76.88	97.08
GSMUA_Achr8P23840_001	Banana	cytosol	76.88	80.12
GSMUA_Achr10P...	Banana	cytosol	76.3	79.52
KRH19864	Soybean	endoplasmic reticulum	75.72	78.92
KRH32476	Soybean	endoplasmic reticulum	75.14	78.31
KRH29917	Soybean	endoplasmic reticulum, nucleus	75.14	78.31
VIT_13s0019g04300.t01	Wine grape	cytosol	75.14	78.31
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	74.57	77.71
Solyc11g069440.1.1	Tomato	nucleus, plastid	71.68	74.7
Solyc06g075180.1.1	Tomato	nucleus	71.68	74.7
Solyc11g065670.1.1	Tomato	cytosol	71.68	74.7
PGSC0003DMT400008687	Potato	cytosol	71.1	74.1
PGSC0003DMT400020871	Potato	cytosol	71.1	74.1
PGSC0003DMT400083480	Potato	cytosol	71.1	74.1
Os02t0699600-01	Rice	nucleus	70.52	73.49
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	69.36	72.29
TraesCS2A01G443200.1	Wheat	cytosol	68.79	71.69
TraesCS2B01G464300.1	Wheat	golgi, plastid	68.79	71.69
TraesCS2D01G442300.1	Wheat	cytosol	68.79	71.69
Zm00001d051543_P001	Maize	plastid	68.21	71.08
Zm00001d003896_P001	Maize	plastid	68.21	71.08
Zm00001d017719_P001	Maize	plastid	68.21	71.08
AT2G37190.1	Thale cress	cytosol	68.21	71.08
EES10673	Sorghum	cytosol	68.21	71.08
EES07409	Sorghum	cytosol	68.21	71.08
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	67.63	70.91
EES11363	Sorghum	cytosol	67.63	70.48
Zm00001d002450_P001	Maize	cytosol	67.63	70.48
AT5G60670.1	Thale cress	cytosol	67.63	70.48
AT3G53430.1	Thale cress	cytosol	67.63	70.48
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	67.05	70.3
GSMUA_Achr7P19710_001	Banana	cytosol	76.3	69.84
TraesCS6B01G295500.1	Wheat	cytosol	50.29	68.5
Zm00001d031348_P001	Maize	cytosol	63.58	66.27
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	68.21	61.78
HORVU6Hr1G067870.1	Barley	cytosol, plastid	67.63	60.0
Zm00001d010017_P001	Maize	cytosol	50.29	38.84
Zm00001d043268_P001	Maize	cytosol	44.51	37.93
GSMUA_Achr10P...	Banana	cytosol	22.54	31.45

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr6G03690_001
EnsemblPlants:GSMUA_Achr6P03690_001	EnsemblPlants:GSMUA_Achr6T03690_001	InterPro:IPR036769	InterPro:IPR036796	UniProt:M0T3W7	PFAM:PF00298
PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf
InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906
SUPFAM:SSF54747	UniParc:UPI000294CCFA	:	:	:	:

Description

60S ribosomal protein L12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G03690_001]

Coordinates

chr6:-:2524864..2525605

Molecular Weight (calculated)

18934.9 Da

IEP (calculated)

7.937

GRAVY (calculated)

-0.306

Length

173 amino acids

Sequence
(BLAST)

001: MPPKFDPTQV VDVYVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKEWKGLREP ERDRKKTKNI KHNGNISLDD VVEIARVMRP RSMAKDLSGT
101: IKEILGTCVS VGCTVDGKDP KDLQTEISDG DVEVPLDFMN HGSVYVWVNI RSFCNQNLIL VKNSGNCSSL WLI

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.