CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	99.4	99.4
KRH19864	Soybean	endoplasmic reticulum	96.99	96.99
KRH32476	Soybean	endoplasmic reticulum	96.39	96.39
VIT_13s0019g04300.t01	Wine grape	cytosol	95.18	95.18
GSMUA_Achr4P09610_001	Banana	cytosol	78.31	94.89
GSMUA_Achr10P...	Banana	cytosol	93.37	93.37
Solyc06g075180.1.1	Tomato	nucleus	93.37	93.37
Solyc11g065670.1.1	Tomato	cytosol	93.37	93.37
Solyc11g069440.1.1	Tomato	nucleus, plastid	93.37	93.37
PGSC0003DMT400083480	Potato	cytosol	92.77	92.77
PGSC0003DMT400020871	Potato	cytosol	92.77	92.77
PGSC0003DMT400008687	Potato	cytosol	92.77	92.77
GSMUA_Achr8P23840_001	Banana	cytosol	92.77	92.77
TraesCS6B01G295500.1	Wheat	cytosol	69.88	91.34
Os02t0699600-01	Rice	nucleus	90.96	90.96
Zm00001d017719_P001	Maize	plastid	90.36	90.36
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	89.76	89.76
Zm00001d051543_P001	Maize	plastid	89.76	89.76
Zm00001d002450_P001	Maize	cytosol	89.16	89.16
AT2G37190.1	Thale cress	cytosol	88.55	88.55
Zm00001d003896_P001	Maize	plastid	88.55	88.55
EES10673	Sorghum	cytosol	88.55	88.55
EES07409	Sorghum	cytosol	88.55	88.55
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	87.95	88.48
AT3G53430.1	Thale cress	cytosol	87.95	87.95
AT5G60670.1	Thale cress	cytosol	87.95	87.95
EES11363	Sorghum	cytosol	87.95	87.95
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	87.35	87.88
TraesCS2D01G442300.1	Wheat	cytosol	87.35	87.35
TraesCS2B01G464300.1	Wheat	golgi, plastid	87.35	87.35
TraesCS2A01G443200.1	Wheat	cytosol	87.35	87.35
Zm00001d031348_P001	Maize	cytosol	83.73	83.73
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	86.75	75.39
GSMUA_Achr6P03690_001	Banana	cytosol	78.31	75.14
HORVU6Hr1G067870.1	Barley	cytosol, plastid	87.95	74.87
GSMUA_Achr7P19710_001	Banana	cytosol	77.71	68.25
CDX91342	Canola	cytosol	19.88	62.26
Zm00001d010017_P001	Maize	cytosol	69.88	51.79
CDX74982	Canola	nucleus	23.49	46.99
Bra005214.1-P	Field mustard	nucleus	23.49	46.99
Zm00001d043268_P001	Maize	cytosol	56.63	46.31

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	UniProt:A0A0R0HHB6	EMBL:ACUP02006835	EnsemblPlantsGene:GLYMA_11G146300
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	GO:GO:0030529	InterPro:IPR036769
InterPro:IPR036796	EnsemblPlants:KRH29917	ProteinID:KRH29917	ProteinID:KRH29917.1	HAMAP:MF_00736	PFAM:PF00298
PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12	InterPro:Ribosomal_L11/L12_N_sf
InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649	SUPFAM:SSF46906
SUPFAM:SSF54747	UniParc:UPI00023CBC37	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:11288420..11289463

Molecular Weight (calculated)

17820.7 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.278

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPSQI VDVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET AKDWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV IEIARVMRPR SMAKDLSGSI KEILGTCVSV GCTVDGKDPK DLQQEISDGD VEVPLD

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.