Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002460.1-P | Field mustard | cytosol | 96.99 | 96.99 |
| CDY31522 | Canola | cytosol | 96.99 | 96.99 |
| CDY53628 | Canola | cytosol | 96.39 | 96.39 |
| AT3G53430.1 | Thale cress | cytosol | 93.98 | 93.98 |
| AT2G37190.1 | Thale cress | cytosol | 92.77 | 92.77 |
| TraesCS6B01G295500.1 | Wheat | cytosol | 69.28 | 90.55 |
| VIT_06s0004g02840.t01 | Wine grape | cytosol | 89.76 | 89.76 |
| VIT_08s0040g01870.t01 | Wine grape | cytosol | 89.76 | 89.76 |
| TraesCS6A01G268300.1 | Wheat | cytosol, nucleus | 89.16 | 89.7 |
| TraesCS6D01G246600.1 | Wheat | cytosol, golgi, nucleus, unclear | 88.55 | 89.09 |
| TraesCS2D01G442300.1 | Wheat | cytosol | 88.55 | 88.55 |
| TraesCS2B01G464300.1 | Wheat | golgi, plastid | 88.55 | 88.55 |
| TraesCS2A01G443200.1 | Wheat | cytosol | 88.55 | 88.55 |
| VIT_13s0019g04300.t01 | Wine grape | cytosol | 87.95 | 87.95 |
| Zm00001d002450_P001 | Maize | cytosol | 87.95 | 87.95 |
| KRH25012 | Soybean | cytosol, endoplasmic reticulum, nucleus | 87.95 | 87.95 |
| KRH29917 | Soybean | endoplasmic reticulum, nucleus | 87.95 | 87.95 |
| GSMUA_Achr4P09610_001 | Banana | cytosol | 72.29 | 87.59 |
| Zm00001d051543_P001 | Maize | plastid | 87.35 | 87.35 |
| Zm00001d017719_P001 | Maize | plastid | 87.35 | 87.35 |
| Solyc11g069440.1.1 | Tomato | nucleus, plastid | 87.35 | 87.35 |
| Solyc11g065670.1.1 | Tomato | cytosol | 87.35 | 87.35 |
| Solyc06g075180.1.1 | Tomato | nucleus | 87.35 | 87.35 |
| EES07409 | Sorghum | cytosol | 87.35 | 87.35 |
| EES10673 | Sorghum | cytosol | 87.35 | 87.35 |
| GSMUA_Achr10P... | Banana | cytosol | 87.35 | 87.35 |
| GSMUA_Achr8P23840_001 | Banana | cytosol | 87.35 | 87.35 |
| Os02t0699600-01 | Rice | nucleus | 87.35 | 87.35 |
| Os04t0598200-00 | Rice | cytosol, extracellular, nucleus, plastid | 87.35 | 87.35 |
| KRH19864 | Soybean | endoplasmic reticulum | 86.75 | 86.75 |
| EES11363 | Sorghum | cytosol | 86.75 | 86.75 |
| PGSC0003DMT400020871 | Potato | cytosol | 86.75 | 86.75 |
| KRH32476 | Soybean | endoplasmic reticulum | 86.75 | 86.75 |
| PGSC0003DMT400008687 | Potato | cytosol | 86.75 | 86.75 |
| PGSC0003DMT400083480 | Potato | cytosol | 86.75 | 86.75 |
| Zm00001d003896_P001 | Maize | plastid | 86.14 | 86.14 |
| Zm00001d031348_P001 | Maize | cytosol | 82.53 | 82.53 |
| Solyc04g050370.1.1 | Tomato | cytosol | 31.33 | 76.47 |
| HORVU2Hr1G102610.1 | Barley | cytosol, mitochondrion | 87.95 | 76.44 |
| HORVU6Hr1G067870.1 | Barley | cytosol, plastid | 89.16 | 75.9 |
| Solyc04g050360.1.1 | Tomato | cytosol | 21.08 | 70.0 |
| GSMUA_Achr6P03690_001 | Banana | cytosol | 70.48 | 67.63 |
| GSMUA_Achr7P19710_001 | Banana | cytosol | 70.48 | 61.9 |
| Solyc04g050410.1.1 | Tomato | cytosol | 16.87 | 59.57 |
| Zm00001d010017_P001 | Maize | cytosol | 70.48 | 52.23 |
| Zm00001d043268_P001 | Maize | cytosol | 57.83 | 47.29 |
| Solyc04g050400.1.1 | Tomato | endoplasmic reticulum, vacuole | 31.33 | 43.7 |
| Solyc04g050420.1.1 | Tomato | cytosol | 31.93 | 41.41 |
| Solyc04g050380.1.1 | Tomato | plastid | 34.94 | 40.85 |
| Solyc04g050390.1.1 | Tomato | plastid | 33.73 | 38.89 |
| Solyc04g050340.1.1 | Tomato | cytosol | 16.87 | 34.15 |
| GSMUA_Achr10P... | Banana | cytosol | 23.49 | 31.45 |
| Solyc04g050430.1.1 | Tomato | cytosol | 16.87 | 30.77 |
Protein Annotations
| Gene3D:1.10.10.250 | MapMan:17.1.2.1.12 | Gene3D:3.30.1550.10 | EntrezGene:836188 | UniProt:A0A178UAV0 | ProteinID:AED97365.1 |
| ArrayExpress:AT5G60670 | EnsemblPlantsGene:AT5G60670 | RefSeq:AT5G60670 | TAIR:AT5G60670 | RefSeq:AT5G60670-TAIR-G | EnsemblPlants:AT5G60670.1 |
| TAIR:AT5G60670.1 | EMBL:AY039614 | EMBL:AY078025 | EMBL:AY088164 | ProteinID:BAB09840.1 | GO:GO:0000027 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR036769 | InterPro:IPR036796 |
| HAMAP:MF_00736 | RefSeq:NP_200875.1 | ProteinID:OAO90765.1 | PFAM:PF00298 | PFAM:PF03946 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00359 | PANTHER:PTHR11661 | PANTHER:PTHR11661:SF2 | UniProt:Q9FF52 | InterPro:Ribosomal_L11/L12 | InterPro:Ribosomal_L11/L12_N_sf |
| InterPro:Ribosomal_L11_C | InterPro:Ribosomal_L11_CS | InterPro:Ribosomal_L11_C_sf | InterPro:Ribosomal_L11_N | SMART:SM00649 | SUPFAM:SSF46906 |
| SUPFAM:SSF54747 | UniParc:UPI000009F884 | : | : | : | : |
Description
RPL12C60S ribosomal protein L12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF52]
Coordinates
chr5:-:24380504..24381599
Molecular Weight (calculated)
17843.8 Da
IEP (calculated)
9.542
GRAVY (calculated)
-0.278
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.