Factsheet for Solyc06g075180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008687	Potato	cytosol	99.4	99.4
Solyc11g069440.1.1	Tomato	nucleus, plastid	98.19	98.19
Solyc11g065670.1.1	Tomato	cytosol	98.19	98.19
VIT_13s0019g04300.t01	Wine grape	cytosol	94.58	94.58
KRH25012	Soybean	cytosol, endoplasmic reticulum, nucleus	93.98	93.98
KRH29917	Soybean	endoplasmic reticulum, nucleus	93.37	93.37
KRH19864	Soybean	endoplasmic reticulum	93.37	93.37
KRH32476	Soybean	endoplasmic reticulum	92.77	92.77
Zm00001d002450_P001	Maize	cytosol	92.17	92.17
TraesCS6B01G295500.1	Wheat	cytosol	70.48	92.13
GSMUA_Achr4P09610_001	Banana	cytosol	75.9	91.97
Zm00001d051543_P001	Maize	plastid	91.57	91.57
EES07409	Sorghum	cytosol	91.57	91.57
EES10673	Sorghum	cytosol	91.57	91.57
GSMUA_Achr10P...	Banana	cytosol	91.57	91.57
Zm00001d017719_P001	Maize	plastid	91.57	91.57
EES11363	Sorghum	cytosol	90.96	90.96
Os02t0699600-01	Rice	nucleus	90.96	90.96
GSMUA_Achr8P23840_001	Banana	cytosol	90.96	90.96
TraesCS2D01G442300.1	Wheat	cytosol	90.96	90.96
TraesCS2B01G464300.1	Wheat	golgi, plastid	90.96	90.96
TraesCS2A01G443200.1	Wheat	cytosol	90.96	90.96
TraesCS6A01G268300.1	Wheat	cytosol, nucleus	90.36	90.91
Zm00001d003896_P001	Maize	plastid	90.36	90.36
TraesCS6D01G246600.1	Wheat	cytosol, golgi, nucleus, unclear	89.76	90.3
Solyc04g050360.1.1	Tomato	cytosol	27.11	90.0
Os04t0598200-00	Rice	cytosol, extracellular, nucleus, plastid	89.76	89.76
AT5G60670.1	Thale cress	cytosol	87.35	87.35
AT2G37190.1	Thale cress	cytosol	86.75	86.75
Zm00001d031348_P001	Maize	cytosol	86.75	86.75
AT3G53430.1	Thale cress	cytosol	86.14	86.14
Solyc04g050370.1.1	Tomato	cytosol	34.94	85.29
HORVU2Hr1G102610.1	Barley	cytosol, mitochondrion	90.36	78.53
HORVU6Hr1G067870.1	Barley	cytosol, plastid	90.36	76.92
GSMUA_Achr6P03690_001	Banana	cytosol	74.7	71.68
GSMUA_Achr7P19710_001	Banana	cytosol	75.9	66.67
Solyc04g050410.1.1	Tomato	cytosol	18.67	65.96
Zm00001d010017_P001	Maize	cytosol	72.29	53.57
Solyc04g050400.1.1	Tomato	endoplasmic reticulum, vacuole	37.35	52.1
Zm00001d043268_P001	Maize	cytosol	59.64	48.77
Solyc04g050380.1.1	Tomato	plastid	39.76	46.48
Solyc04g050420.1.1	Tomato	cytosol	35.54	46.09
Solyc04g050390.1.1	Tomato	plastid	39.76	45.83
Solyc04g050340.1.1	Tomato	cytosol	19.88	40.24
Solyc04g050430.1.1	Tomato	cytosol	19.88	36.26

Protein Annotations

Gene3D:1.10.10.250	MapMan:17.1.2.1.12	Gene3D:3.30.1550.10	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0019843
GO:GO:0022625	GO:GO:0030529	InterPro:IPR036769	InterPro:IPR036796	UniProt:K4C9N4	HAMAP:MF_00736
PFAM:PF00298	PFAM:PF03946	ScanProsite:PS00359	PANTHER:PTHR11661	PANTHER:PTHR11661:SF2	InterPro:Ribosomal_L11/L12
InterPro:Ribosomal_L11/L12_N_sf	InterPro:Ribosomal_L11_C	InterPro:Ribosomal_L11_CS	InterPro:Ribosomal_L11_C_sf	InterPro:Ribosomal_L11_N	SMART:SM00649
SUPFAM:SSF46906	SUPFAM:SSF54747	EnsemblPlantsGene:Solyc06g075180.1	EnsemblPlants:Solyc06g075180.1.1	UniParc:UPI000276698D	:

Description

No Description!

Coordinates

chr6:+:46660886..46661386

Molecular Weight (calculated)

17809.6 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.329

Length

166 amino acids

Sequence
(BLAST)

001: MPPKFDPSQV VEVFVRVTGG EVGAASSLAP KIGPLGLSPK KIGEDIAKET SKDWKGLRVT VKLTVQNRQA KVSVVPSAAA LVIKALKEPE RDRKKTKNIK
101: HNGNISLDDV IEIAKVMQPR SMAKDLSGTV KEILGTCVSV GCTVDGKDPK DLQQEITDGD VEIPQD

Best Arabidopsis Sequence Match ( AT2G37190.1 )
(BLAST)

001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV TEIARIMRPR SIAKELSGTV REILGTCVSV GCTVDGKDPK DIQQEIQDGE VEIPEN

Arabidopsis Description

RPL12A60S ribosomal protein L12-1 [Source:UniProtKB/Swiss-Prot;Acc:P50883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.